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BMC loci
Shell proteins
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BMC type:
PVM
(
complete list of loci
) (
list of all HMMs in BMC type
)
Example locus:
Organism: Rhodopirellula baltica (strain DSM 10527 / NCIMB 13988 / SH1). Bacteria; Planctomycetes; Planctomycetia; Planctomycetales;
BMC-P
BMC-H/Hp
BMC-Ts/sp
BMC-Tdp
AldDh
PTAC
signature enzyme
AlcDh
regulator
others
no assignment
RB2560
RB2562
RB2566 HMM02866_1_pvmeut PVM (
HMM details
)
RB2568 HMMaldol_2_pvm1 PVM (
HMM details
)
RB2571 P_adobe PVM (
HMM details
)
RB2574 HMM02441_01 PVM (
HMM details
)
RB2577 P_slate PVM (
HMM details
)
RB2579 HMMalddh_1_eutpdugrm PVM (
HMM details
)
RB2581 P_dirtyPink PVM (
HMM details
)
RB2582 HMMacetkin_1 PVM (
HMM details
)
RB2585 H_purplishGrey PVM (
HMM details
)
RB2586 H_vividBlue PVM (
HMM details
)
RB2587
RB2588 HMMptac_2_mix PVM (
HMM details
)
RB2590 HMMreg00455_2_PVM PVM (
HMM details
)
RB2591
RB2592
BMC shell protein types:
BMC-H (
map on tree
)
H_purplishGrey
H_vividBlue
BMC-P (
map on tree
)
P_slate
P_dirtyPink
P_adobe
Reference:
BMC Caller: a webtool to identify and analyze bacterial microcompartment types in sequence data