BMC Caller Citations
Please use to following reference for citing BMC caller:
BMC Caller: a webtool to identify and analyze bacterial microcompartment types in sequence data
Sutter M & Kerfeld CA; Biology Direct 17, 9 (2022)
Additional relevant citation:
A catalog of the diversity and ubiquity of bacterial microcompartments
Sutter M, Melnicki MR, Schulz F, Woyke T & Kerfeld CA; Nature Communications 12, 3809 (2021)
Evolutionary relationships among shell proteins of carboxysomes and metabolosomes
Melnicki MR, Sutter M, Kerfeld CA; Current Opinion in Microbiology 62:19 (2021)
Clues to the function of bacterial microcompartments from ancillary genes
Kirst, H, Kerfeld CA; Biochemical Society transactions 49(3):1085-1098 (2021)
BMC caller is using the following tools for analysis and visualization:
Weblogo: http://weblogo.threeplusone.com/
HMMER (hmmsearch, hmmscan, hmmbuild, hmmpress): hmmer.org
trimAl: trimal.cgenomics.org
ClustalW: clustal.org
Reference:
BMC Caller: a webtool to identify and analyze bacterial microcompartment types in sequence data