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BMC type: PVM


Organism: Verrucomicrobiales bacterium. Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales.


   BMC-P    BMC-H/Hp    BMC-Ts/sp    BMC-Tdp    AldDh    PTAC    signature enzyme    AlcDh    regulator    others    no assignment

    DDW21_00425 (fasta)
                   DDW21_00430 (fasta)
                     DDW21_00435 (fasta)
                        DDW21_00440 (fasta)
                                             DDW21_00445 (fasta)
                                                        DDW21_00450 (fasta)
                                                         DDW21_00455 (fasta)
                                                            DDW21_00460 (fasta)
                                                                   DDW21_00465 (fasta) HMMreg00455_1_GRM5 PVM (details)
                                                                          DDW21_00470 (fasta) HMMptac_2_mix PVM (details)
                                                                            DDW21_00475 (fasta) H_purplishGrey PVM (details)
                                                                              DDW21_00480 (fasta) H_vividBlue PVM (details)
                                                                                          DDW21_00485 (fasta) HMMacetkin_1 PVM (details)
                                                                                             DDW21_00490 (fasta) H_blurple PVM (details)
                                                                                                DDW21_00495 (fasta) P_dirtyPink PVM (details)
                                                                                                 DDW21_00505 (fasta)
                                                                                                   DDW21_00510 (fasta)
                                                                                                       DDW21_00515 (fasta)
                                                                                                          DDW21_00520 (fasta)
                                                                                                             DDW21_00525 (fasta)
                                                                                                                   DDW21_00530 (fasta)
                                                                                                                      DDW21_00535 (fasta)
                                                                                                                             DDW21_00540 (fasta)
                                                                                                                                     DDW21_00545 (fasta)
                                                                                                                                                               DDW21_00550 (fasta)

BMC shell protein types:

BMC-H(map on tree)

       H_purplishGrey
       H_vividBlue
       H_blurple

BMC-P(map on tree)

       P_dirtyPink

(complete list of loci)

Protein sequences:

>DDW21_00425
MLFGEIKPEVLRKLLLPENKEKLRTLLLYHLVPGKVMAADLTSGNVKTTNAEKAKIAVSRGKIEIEGNKVFSLDVVSKNGILHTIGTVWIADSYEGFAGLDKKILEPAVVLGTATQQLQS

>DDW21_00430
MSFIPPSDYILTKLLGENPQTSIWLAEQVSVRRNVVLEELRNPQSSSREEFLAAVRAKASVDHPLIASVYEAINDDNTCFFTREWLPGDNLAQLMASGVVLKPAQVAHIIKRIAEACMHLEERGTATSLLSTKHIYLNEHNVLRLSNLAKAGNRSENASCFDIEALGQELPAIVEPGATGQTRLQMLMHWMTGANPEHILQWKDIRHYADQIEQQLATPIVPLQVSTRKSVKPVKKNSAFPWIIGAAAVLCIGLVMLVLKQQKDTPSIVTAEPLRAPILIPEGKYPTPDGGQGFVRKFWLSAYEVTIGEYREFIQALDAMDREQRILLDHESQPPGKVSHEPEDWYEIVAAAELEQVWQDRKLTLQVPMFQIDWWDAHAYCEWKRARLPTQEEWFAAMNYQTPQPTALKPGPWNEVQALDQNGSGFLGMAGGVCEWTRKPAKNPSNPLGAGQFVIIGASFENTANGAYAREWTNDRDVKRDDLGFRIGYDHQPE

>DDW21_00435
MNKAELIEAVQKAMGKEATKRAAEDAVNTVLDAIATGIKKTKKVQLIGFGTFTVKKRAARMGRNPKTGESMKIAASKSVGFKASSSLKGGL

>DDW21_00440
MNKHDPRLIQAVRSIESAAQGIPLRGDLEAELAIVERAQQRGWFTPDEDEMVLTRYSQYLSSPAALLISLEQLESTLRPNHVKWSDHLPAFTAAFTAACLMVRGS

>DDW21_00445
AHGQLISLKNEKSVFSTADVSGYADARGSFEDARPLKGFGNLPADHGRYLGYYKNGQLIVVESEVLGARILEAVTQSDGSIVRHWQIGPRKQALVVLLADEAGAVTAATDGASAESADGLKVALATDGKGMALQTATDAKSRLLLKIPAGDSVLRVQVAFARGSAAKTANLVDLKALTKGGKPQYEESLTSAGTVGTPEDGSSWAVDQISLPANNPWKSNLRFGGFDFLDENTAVLSTWNGDVWTVSGFQKDIKQLTWKRIASGLFETLGLKCVDGKIYVNGRDGITQLIDHNGDGEIDQFSAFNRDVLITKNFHEFAFDLQTDKAGNFYFCKASPVRGGGRGFDQIIPHHGIIGKISPDGKKFEVVATGLRAPGGLGVGPSGQITTGENEGTWQPCCKINYFTPAQAPAFLGTEPSRHELGKDLTFHEPLCYLPMDVDNSGGSQVWVPEGVDFGLKSGEMIHLSYGQSSLYRVLPSAAGDVMQGGVTKIPAKLQSSAMRARFHKDGSLFVLGFRGWQTNAPTECAFQRVRYVKDAPILIPQSQQITTKGVTLQFAVELDEELATDVTSYAVERWKYIRCEQYGSGEFSVDKPDTTAEENALKSESKNHRVHDKVEVLSAKLTKDGKGVEIEIKDMKPTMQLKVSYDLESTDGDVLIGNTVSTVKKL

>DDW21_00450
GSSFIIDLAKKRPVIWKKLDEPEQHFGLPRSTFSNLHKAATDRKRRQQFQLAIEFFQQHREEILSMREDPTIAPLIHILQEEEQQLSWQQQKIWRRRIFYRWFSFLSSHRSGYRRVMFHLFRWSGSAIAELRQPGVKPSGAPKRISPQQREELLALARPGDVFVTRHDDAMSNLFLPGFWPHAALHLGDRNELEQVIGKIPAPIKPRYKEQIRFLEAKKDGVRFRPAEETLHVDACLLLRPPLDVDSLRDALSRCLSHEGKKYDFLFDFRTTDRLACTEVIYRTYHGYSPVFFELIPKAGRVCIPAESLIDQALACGFTLVATCNVTPSSINKGEAAYADLALSRKQL

>DDW21_00455
MVPHHDQTNAPDGGLRFIMSLRITGEGHISSIEFRAGTMEHDG

>DDW21_00460
DPASRDMKRKLESIQWFAASNCGSPIETEAGWLVITHGVGPMRKYCISAALLDLHDPTIVIGRLAEPLLSPAGNERDGYVPNVVYSCGSRVHNGRLILPYAIGDRASAIVSMELSDLLEALLKSC

>DDW21_00465
MLPLERQQKILAQLNESGNLRTIEIAAFLNVTDETVRKDFEALEKRGYLIRVHGGATSPLKIREEISLTERQLTNRDEKTAIAREAAKRIQPNETIFLDASSTALTLTEFLPDYPLTILTNALNVFTALEGRSNLDLICTGGLYDARSRSYIGLIAEQSLRRFNIHRMFFSGSGLHLTRGISETNNRQAVFKERVVACAEDVVFLSDHTKLGQKAAFFFAQLSDISCIITDSQADQKILSDIASHGVEVIEA

>DDW21_00470
MSTSINSKTPRTVIEQLVREQIYAKMGLAAPQQAPNQLLVNISARHCHLTQEAVEAFFGPGYQLQPMKDLYQHGQYAAKESITLIGPRSRVISNLRILGPCRQLNQVELAYTDAIALGFDIPVRMSGDIVGTQGGMLMGPHGYFELKEGIIRAQPHVHMHPDDANFYGVKHLDVMKLKVHGDLGMTFDNLVVRVDPSFKLEVHIDTDEGNACGLKPNTFCELIK

>DDW21_00475
MSAALGFIETKGYVGSVEATDAMTKAANVELVKQIQTGGGFLTVIVKGDVGSVKSAVSAGADAAGRVGELVGSHVIARPHNDLLIQLGIA

>DDW21_00480
MAKQAIGILETKGFIALIEGADAALKSADIQMTGWDKIGSGLVTGFFTGNVAAVKAGLDAAAAAASNVGTVTSVQVIARPHDDLSKLGTWIG

>DDW21_00485
MLVLIANLGSTSFKYRLYRMDEGGQEVLAKGGYERVSDYAAVIDDALATLQKDGVISSAEEIDAVGFKTVLGKDLSGCVIADDVCVKALEDFAAVAPAHNPPYANGIRQFGKSLPHAKLVALFETAFYQWVSEARSIYALPKAWREIGIRRYGFHGASHKFVAERSAELLGRADVAQSTASLYLHGPAPIAGKPLRVVSCHLGGSSSITGIFNGVAIVTSMGFSPQSGLPQNNRVGDLDSGALPYAMKTLGISLEEAERQLTKESGLQGISGISNDIRDIHAAKNQGNADAALALAHLVDSIRHWVGSFAWQMGGIDALVFTAGIGENDYTVRKAVCEGLEEFGLVFDDVRNVACRAVEAELSAPHSKAKIFVIPANEELVLAREVFRKVTHHEIS

>DDW21_00490
MAKQAVGLLETRGLACLVVGVDAMLKSANVELAGPMKQVGSALCNAVITGDVAAVKSAIDTGAAAASSCGEVVSAHVIARPDDAIEGVLPKDASAAARAPRK

>DDW21_00495
MFLAEVIGQVVATKKDEHLTGRKLLVLRPKLVDDKDSTQFKNGQNTIIAIDTVGAGEGELVLFCQGGSARQAADLKLVPVDAVVIAIVDRVEVLGNTVYKNS

>DDW21_00505
MTLDQKQIQSVVESVLSRLVAANVTAAPTSAAAAGCGCGCGGGEGNYGVFTCVDKAADAA

>DDW21_00510
CGKVARASAMVAASILGMLQPAHPAAESLQTATVDLTVLNNSGEFPAADLADQSKLMKFSLRAQY

>DDW21_00515
MIDKVATLCQHDPMQLFYHGTVLCKVAFAIIITSTFLVSCGPDLNAIPEATPKMAMEMGTTQHQLQNGRSIYMAHCNKCHERVPPAKIDPEAWREVLPHMSQNAHLNSTQLADLQIYLIAAHGTVYQLDLEH

>DDW21_00520
MKKLFFTLPLLILCHCAVTDNEQGGISEVPNPSPEMAQKSGKSLEQLQRGHVVYMLHCAECHTYPLPHDLDEVDFVDSVPKMVKHSGLNPSDGNDVLAYILAVKNM

>DDW21_00525
MHTTGFQLFFSFALLSVLLPACTPQTLDQKTPVATAEMANRSKQSLDTLQTGRALYIAHCGRCHEHQLPASVSSEDWHIVAPGMAWNAGLNQGDERAVLAYLLAATSH

>DDW21_00530
MDSFLELALFSLIMALGQFSPGPDMLLLTRSSLHHGARAGSSTALGIATGLALHSAIALSGGVFLLQQAAPMITLITKILATCYLFYLAWMILQASTSLSTSANPAPARSHFLRGLTCNLLNPKVALILASVCTPFLHKNASPLRPWLLASIIVVQGAALWILWAHLLQHNRLKTFYEQHQDRISQGFAAFLALLSVLLWKP

>DDW21_00535
MTNPTNVLAQGIEIIGSVRFSNDMIIDGKIEGQIMSDKGRVTIGENATIKGDITAGEVKVFGKVEGKITSDRCELKAKSRLDGDIKAKMFAMEEGAQLAGRTEIG

>DDW21_00540
MEIRPVGIVRSCYEEKFAVPRQPGLCPSAWARVECEEEFGNEDFFRGMEGFSHVWLIFGFHETLEQGYAPTVRPPRLGGNERVGVFASRSTFRPNGLGLSLCRMEGLERKEGKMLVHLGGADLIDGTPVYDIKPYLAYAESISDASCGYAADAPERKEVQILSECARAFAKLSERDQSIVKEALALDPRPAAHVDSERIYGARLCGVNVRFRVGKVVEVVEILTKRGKD

>DDW21_00545
MRPFPAHFAIACNPKFNQTKSPSHFKNSPHIPLPSHQKSLSIYHVTAKIEYCHRNSESLHYPNRTTHMKNHNIRRTKGFTLVELLIVISIIMVLAALGFAGVQAAMKRSKTVQTQNLVTNLALAVNNYFDEYGSLPITNPSDTPLNTQDVAGTDLLTVLIGKEQQSSTQLNTRNIKFLEAKQAIGRKPGIVYSQNNTVSAMNDAFGEAIYIVFDSDYDEEIRNPIKQGADPDIVRGARAVVYSHGADRLPATKDDVKSW

>DDW21_00550
MQVFFCISKDRTHPVRNDLCLKTNFSSPKNPRPLSHRSCFCVTAFLAVVSAISPLLAAEKITYDDHVFPIFEQACLNCHNPDKAKGGLDLSSFSNTMKGGSGGKIAEPGDTSSSLLESVMRTGELTMPPEGDPISPAHIATLKAWIEGGLLENKNSAARKPSKPQFNTSMSSAPGAKPEGPPPLPLHVLLEPLVAAPRGAAIHAIAAAPWAPMIAVTSLRQICLYHSDSLELIGILPFPEGEPTSLAFTPDSRYLIVGGGIAGKSGTTVTFDVTTGARILTAAKEFDSVLCADIRPGFDVVATGSPSKLVKLWNTQTTELQKSIKKHTDWVTSLDISPDGILLATGDRNGGVLVWEADTGGEFHALRAHQAAITHTAYRNDSNILGSSSEDGTVRMWEMNGGTEIKKIDAHGGGVIGFDWTRDGHFVTAGRDLKAKIWKPDFNPLRDFAAVPALPTAIAVDAEGKRAFVGDINGLVHVFQCDNGALIATLQNNPPTIATRITQLDQALAAHPESITVAQKTTTDAAAKLEEHKKIIAAATTAAQQSKDAVGPLLQQENEIKAKLEASRQALAAKKTEAETLRPSHAPALALVEQSRTALATAQGAGDGAAIATTQAALTDAEGKLNQITQSLAALDATVATLAKEEQDLNNALAPSTKAVADAQAKVAPAEADLKGKQDALAALEKNHVDAQAHLQAKQTEPLRLKQAHNHWTAAAINAKALAESAIASTLHQEFEHQTTSFTDAAKRIDGAAAELNALRQALAELTKKIHDAQSVTTPDPTIIKLMEVDIKTKQQSLSSASSALQKAEAEMIEMRQTIEQKTPERHTKLILSSQLKADYLRQLEQKIE

msu.edu Reference: A catalog of the diversity and ubiquity of bacterial microcompartments
Sutter M, Melnicki MR, Schulz F, Woyke T & Kerfeld CA; Nature Communications 12, 3809 (2021)
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