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BMC type: PDU1AB


Organism: Shigella flexneri 1235-66. Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;


   BMC-P    BMC-H/Hp    BMC-Ts/sp    BMC-Tdp    AldDh    PTAC    signature enzyme    AlcDh    regulator    others    no assignment

  SF123566_3310 (fasta)
         SF123566_3311 (fasta)
                  SF123566_3312 (fasta) HMM13520tp_1_pdu EUT2D (details)
                   SF123566_3313 (fasta)
                        SF123566_3314 (fasta) HMMreg00126_1_mix GRM3B (details)
                         SF123566_3315 (fasta)
                           SF123566_3316 (fasta)
                            SF123566_3317 (fasta)
                             SF123566_3318 (fasta)
                              SF123566_3319 (fasta)
                               SF123566_3320 (fasta) H_robinEggBlue GRM4 (details)
                                    SF123566_3321 (fasta) Tsp_greenishBeige PDU1AB (details)
                                               SF123566_3322 (fasta) HMMpropdeh1_1_pdu PDU1AB (details)
                                                   SF123566_3323 (fasta) HMMpropdeh3_1_pdu PDU1AB (details)
                                                      SF123566_3324 (fasta) HMMpropdeh2_1_pdu PDU1AB (details)
                                                                  SF123566_3325 (fasta) HMM08841dhact_1_pdu PDU1AB (details)
                                                                    SF123566_3326 (fasta) HMMpropdeh3_2_pdusml PDU1AB (details)
                                                                     SF123566_3327 (fasta) H_tan PDU1AB (details)
                                                                        SF123566_3328 (fasta) H_driedBlood PDU1AB (details)
                                                                            SF123566_3329 (fasta) HMMptac_2_mix PDU1AB (details)
                                                                               SF123566_3330 (fasta) HMM15953pduput_1_pdu1 PDU1AB (details)
                                                                                SF123566_3331 (fasta) P_babyPink PDU1AB (details)
                                                                                      SF123566_3332 (fasta) HMM01923cobtr_1_pdu PDU1AB (details)
                                                                                               SF123566_3333 (fasta) HMMalddh_1_eutpdugrm PDU1AB (details)
                                                                                                     SF123566_3334 (fasta) HMM00465alcdh_3_mix PDU1AB (details)
                                                                                                              SF123566_3335 (fasta) HMMPduS_1_all PDU1AB (details)
                                                                                                                 SF123566_3336 (fasta) Ts_dodgerBlue PDU1AB (details)
                                                                                                                   SF123566_3337 (fasta) Hp_euts_babyPurple PDU1AB (details)
                                                                                                                      SF123566_3338 (fasta) HMM10662PduV_1_mix PDU1AB (details)
                                                                                                                             SF123566_3339 (fasta) HMMacetkin_1 PDU1AB (details)
                                                                                                                                  SF123566_3340 (fasta) HMM00288_1_pdu PDU1AB (details)
                                                                                                                                    SF123566_3341 (fasta)
                                                                                                                                     SF123566_3342 (fasta)
                                                                                                                                         SF123566_3343 (fasta)
                                                                                                                                           SF123566_3344 (fasta)
                                                                                                                                              SF123566_3345 (fasta)
                                                                                                                                                     SF123566_3346 (fasta)
                                                                                                                                                          SF123566_3347 (fasta)

BMC shell protein types:

BMC-H(map on tree)

       H_robinEggBlue
       H_driedBlood
       H_tan

BMC-Hp(map on tree)

       Hp_euts_babyPurple

BMC-P(map on tree)

       P_babyPink

BMC-Ts(map on tree)

       Ts_dodgerBlue

BMC-Tsp(map on tree)

       Tsp_greenishBeige

(complete list of loci)

Protein sequences:

>SF123566_3310
MAIKKLDVVTQVCPFPLIEAKAALAEMASGDELVIEFDCTQATEAIPQWAAEEGHAITDYQQIGDAAWSITVQKA

>SF123566_3311
MFSMILSGLICGALLGFVMQRGRFCLTGGFRDMYIAKNNRMFYALLIAISAQSVGVFALIQAGLLTYEAGAFPWLGTVIGGYLFGLGIVLAGGCATGTWYRAGEGLIGSWIALFTYMVMSAVMRSPHASGLNQTLQHYTTEHNSIAETFNLSVWPLVTVLLVITLWVVMKELKKPKLKVATLPPRRTGIAHILFEKRWHPFVTAVLIGLIALLAWPLSEATGRMFGLGVTSPTANILQFLVAGDVKYINWGVFLVLGIFVEAFIAAKASREFRVRAADAQTTLRSGLGGVLMGFGASIAGGCSIGNGLVMTAMMTWQGWIGLVFMILGVWTASWLVYVRPQRKARLATAAAN

>SF123566_3312
MSHNVTPNTSRVELRKTLTLVPVVMMGLAYMQPMTLFDTFGIVSGLTDGHVPTAYAFALIAILFTALSYGKLVRRYPSAGSAYTYAQKSISPTVGFMVGWSSLLDYLFAPMINILLAKIYFEALVPSIPSWMFVVALVAFMTAFNLRSLKSVANVNTVIVVLQVVLIAVILGMVVYGVFEGEGAGTLASTRPFWSGDAHVIPMITGATILCFSFTGFDGISNLSEETKDAERVIPRAIFLTALIGGMIFIFATYFLQLYFPDISRFKDPDASQPEIMLYVAGKAFQVGALIFSTITVLASGMAAHAGVARLMYVMGRDGVFPKSFFGYVHPKWRTPAMNIILVGAIALLAINFDLVMATALINFGALVAFTFVNLSVISQFWIREKRNKTLKDHFQYLFLPMCGALTVGALWVNLEESSMVLGLIWAAIGLIYLACVTKSFRNPVPQYEDVA

>SF123566_3313
MVILLYGDNRRVSKKLPHFFGFLSDNNCRFLVNIYPVRSPASWYE

>SF123566_3314
MKPLLDVLMILDAIEKEGSFAAASAKLYKTPSALSYTVHKLESDLNIQLLDRSGHRAKFTRTGKMLLEKGREVLHTVRELEKQAIKLHEGWENELVIGVDDTFPFSLLAPLIEAFYQHHSVTRLKFINGVLGGSWDALTQGRADIIVGAMHEPPSSSEFGFSRLGDLEQVFAVAPHHPLAQEEEPLNRRIIKRYRAIVVGDTAQAGASTASQLLDEQEAITVFDFKTKLELQISGLGCGYLPRYLAQRFLDSGALIEKKVVAQTLFEPVWIGWNEQTAGLASGWWRDEILAN

>SF123566_3315
MARLLGLQPPQFRNSLDSGKGKIIDGSRICDELGFEYQYPDPLVMPLE

>SF123566_3316
MKKVAIVGLGWLGMPLAMSLSARGWQVTGSKTTQDGVEAARMSGIDSYLLRMEPELVCDSDDLDALMDADALVITLPARRSGPGDEFYLQAVQELVDSALAHRIPRIIFTSSTSVYGDAQGTVKETTRVIR

>SF123566_3317
MKLIWSEESWDDYLYWQETDKRIVKKINELIKDTRRTPFEGKGKPEPLKHNLSGFWSRRITEEHRLVYAVTDDSLLIAACRYHY

>SF123566_3318
LNLRQHLARLGRKSLSFSKSVELHDKVIGHYLNIKHYQ

>SF123566_3319
MNDSLKAQCIAEFLGTGLFLFFGIGCLSALKVAGASLGLWEICIIWGLGISLAVYLTAGIS

>SF123566_3320
MQQEALGMVETKGLTAAIEAADAMVKSANVMLVGYEKIGSGLVTVIVRGDVGAVKAATDAGAAAARNVGEVKAVHVIPRPHTDVEKSYRRELANEQQ

>SF123566_3321
MSSNELVEQIMAQVIARVATPEQQAIPENNPPTRETAMAEKSCSLTEFVGTAIGDTVGLVIANVDSALLDAMKLEKRYRSIGILGARTGAGPHIMAADEAVKATNTEVVSIELPRDTKGGAGHGSLIILGGNDVSDVKRGIEVALKELDRTFGDVYANEAGHIEMQYTARASYALEKAFGAPIGRACGVIVGAPASVGVLMADTALKSANVEVVAYSSPAHGTSFSNEAILVISGDSGAVRQAVISAREIGKTVLATLGSEPKNDRPSYI

>SF123566_3322
MRSKRFEALAKRPVNQDGFVKEWIEEGFIAMESPNDPKPSIKIVNGMVTELDGKSASEFDLIDHFIARYGINLARAEEVMAMDSVKLANMLCDPNVKRMDIVPLTTAMTPAKIVEVVSHMNVVEMMMAMQKMRARRTPSQQAHVTNVKDNPVQIAADAAEGAWRGFDEQETTVAVARYAPFNAIALLVGSQVGRPGVLTQCSLEEATELKLGMLGHTCYAETISVYGTEPVFTDGDDTPWSKGFLASSYASRGLKMRFTSGSGSEVQMGYAEGKSMLYLEARCIYITKAAGVQGLQNGSVSCIGVPSAVPSGIRAVLAENLICSSLDLECASSNDQTFTHSDMRRTARLLMQFLPGTDFISSGYSAVPNYDNMFAGSNEDAEDFDDYNVIQRDLKVDGGLRPVREEDVIAIRNKAARALQAVFAGMGLPPITDEEVEAATYAHGSKDMPERNIVEDIKFAQEIINKNRNGLEVVKALAQGGFTDVAQDMLNIQKAKLTGDYLHTSAIIVGDGQVLSAVNDVNDYAGPATGYRLQGERWEEIKNIPGALDPNELG

>SF123566_3323
MEINEKLLRQIIEDVLSEMQTSDKPVSFRSTTAASAPQAAAVQGDSFLTEIGEAKQGQQQDEVIIAVGPAFGLSQTVNIVGIPHKNILREVIAGIEEEGIKARVIRCFKSSDVAFVAVEGNRLSGSGISIGIQSKGTTVIHQQGLPPLSNLELFPQAPLLTLETYRQIGKNAARYAKRESPQPVPTLNDQMARPKYQAKSAILHIKETKYVVTGKNPQELRVAL

>SF123566_3324
MNTDAIESMVRDVLSRMNSLQGESATPTTASSSAHTAKVTDYPLANKHPEWVKTATNKTLDDFTLENVLSNKVTAQDMRITPETLRLQAEIAKDAGRDRLAMNFERAAELTAVPDDRILEIYNALRPYRSTKDELMAIADDLDNRYQAKICAAFVREAAALYVERKKLKGDD

>SF123566_3325
MRYIAGIDIGNSSTEVALATLDETGALSITGSALAETTGIKGTLRNVFGIQEALALAAKNAGINVSDISLIRINEATPVIGDVAMETITETIITESTMIGHNPKTPGGVGLGVGITITPEDLLSRPADTPYILVVSSAFDFADVATMINASVRAGYQLTGVILQQDDGVLVSNRLTHPLPIVDEVLHIDRIPLGMLAAIEVAVPGKVIETLSNPYGIATVFGLNADETKNIVPMARALIGNRSAVVVKTPSGDVKARAIPAGNLELQSQGRTVRVDVAAGADAIMKAVGECPKLDNVTGEAGTNIGGMLENVRQTMAELTNKPSHEIFIQDLLAVDTSVPVSVTGGLAGEFSLEQAVGIASMVKSDRLQMAMIAQEITQKLNVDVQVGGAEAEAAILGALTTPGTTRPLAILDLGAGSTDASIINPKGDIIATHLAGAGDMVTMIIARELGLDDRYLAEEIKKYPLAKVESLFHLRHEDGSVQFFPTPLPPTVFARVCVVKPDELVPLPGDLALEKVRAIRRSAKERVFVTNALRALRQVSPTGNIRDIPFVVLVGGSSLDFEVPQLVTDALAHYRLVAGRGNIRGTEGPRNAVATGLILSWYKAFAHGK

>SF123566_3326
MESNLTTPAIVIFTTNDCAGVWNDVLLGIEEEGIPFLIQESHSTDVIHNAWLAACQSPLLVGIGCSREKLVVHYKNLPTSAPLFTLTYHQNSHDRRSIGNNAARLVKGIPFRDCHS

>SF123566_3327
MNNALGLVETKGLVGAIEAADAMVKSANVQLVGYEKIGSGLITVMVRGDVGAVKAAVDAGSAAASAVGEVKSCHVIPRPHSDVEAILPKSA

>SF123566_3328
MKQSLGLLEVSGLALAISCADVMAKAASITLVGLEKTNGSGWTVIKIIGDVASVQAAISTGANLAELRNGLVAHRVISRPGEGILSHSVPVQPEPAPEPIPDVSQEQEEMATEIALPDAAQQTELISCNLCLDPACPRQKGEPRTLCLHSGKRGEA

>SF123566_3329
MDKQQLETTVTKVLDEMRERPIPLGISNRHIHLCAEDYTRLFPNQPISEKKSLLQPGQYAAEQTVTLVGPKGQLNNVRILGPLRSKSQVEISRTDARTLGIAAPLRMSGNIQGTPGIRLISPFAELELLSGVIVAQRHIHMSPLDALILRVSHGDKVSVAINGDERRLIFDNVAVRVSPDMRLEMHIDTDEANAAGADNPQAFATLVTSR

>SF123566_3330
MNNELLQRIIEEVVSRLKKRAESTISLSVAQLREIDPRTLCCQYSSLHLLLADLPFLEQIAEGCPANMSVVTIHEALACGVRVKISLQHRLLPAIPVKTLARLPLEFCDELGRIIVLHPETLLSYADVAQLKGGVLVLRRRCVVTALAQEAVATRNVQLIKQE

>SF123566_3331
MHLARVTGVVVSTQKSPSLVGKKLLLVRRVSADGELPASPVSGDEVAVDSVGAGTGELVLLSSGSSARHVFSGPNEAIDLAIVGIVDTLSR

>SF123566_3332
MAIYTRTGDAGTTALFTGQRVSKTHPRVEAYGTLDELNAALSLCVCAAKNPQHRQLLENIQLQLFWFSAELASESEQPTPEQRYISSEEIAALEAAIDTAMGRVPPLRSFILPGRSEAASRLHFARTLARRAERRLVELSTEISVRHVLMRYINRLSDCLYALARAEDHDAHQSDIIQKVTERYLAAIRTSPPQEPTMSLSFQELHQLTRTAVTRAEELQVPVVICIVDANGTQMVTWRMPDALLVSSELAPKKAWTAVAMKTATHELTSAVQPGAALYGLESHMQGKIVTFGGGYALWREGLILGGLGISGGSVEQDMDIAETAIAAINVRTHQ

>SF123566_3333
MNTSELETLIRNILSEQLAPAKAEVKGNGIFPSVDEAIDAAHQAFLRYQQCPLKTRSAIINALREELTPHLASLAAESAAETGMGNKEDKFLKNKAALDNTPGIEDLTTTALTGDGGMVLFEYSPFGVIGSVAPSTNPTETIINNSISMLAAGNSVYFSPHPGAKAVSLKLIAMIEDIAFRCCGIRNLVVTVTEPTFEATQQMMAHPKIAVLAITGGPGIVAMGMKSGKKVIGAGAGNPPCIVDETADLVKAAEDIINGASFDYNLPCIAEKSLIVVDAVAERLVQQMQSFGALLLHNEDINKLRAACLPEGIANKKLVGKSPAALLEAADIPVPAKTPRLLIGIVNDDDPWVTSEQLMPMLPIVSVKDFDSALALALKVEEGLHHTAIMHSQNVSRLNLAARTLQTSIFVKNGPSYAGIGVGGEGFTTFTIATPTGEGTTSARTFARSRRCVLTNGFSIR

>SF123566_3334
MNSFSLQTRLFSGQGSLDVLKRFSNKHIWIICDGFLARSPLIEKLRNTLPADNRISIFSDITPDPTIGTVVQGIAQMQSLQPDVVIGFGGGSALDAAKAIVWFSRQFGIEIETCVAIPTTSGTGSEVTSACVISDPEKGIKYPLFNNALYPDMAILDPMLVVSVPPAITANTGLDVLTHALEAYVSTKASDFTDALAEKAAQIVFQFLPVAVSKGDCLATRGKMHNASTLAGMAFSQAGLGINHAIAHQLGGQFHLPHGLANALLLTRVIQFNARDPRAAKRYARFAKACHLCPDSANDTAALNALIHHIEQLKNSAHYRHSLMH

>SF123566_3335
MNTAMTAEHVLYDAQTIRDRVRAAGVVGAGGAGFPAHVKLQAQVDTFLVNAAECEPMLKVDQQLMAVQAARLVRGVQYAMTATGANAGIIALKEKYQKAINALTPLLPANIRLHILPDVYPAGDEVLTIWMATGRRVPPAALPVSVGVVVNNVQTVLNIARAVEQQYSVTRRTLTVNGAVARPLTLSVPIGMSLREVLALAGGATVDDPGFINGGPMMGGLITSLDTPVSKTTGGLLVLPKSHALIQRRMQDERTVLSVAKTVCEQCRLCTDLCPRHLIGHELSPHLLVRAVNYQQAATPQLLLTALTCSECNVCESVACPVGISPMRINRMLKRELRALNHRYEGPLNPEDEMARYRLIPVKRLITKLGLSDWYHDAPLAETDYPTDKTTLLLRQHIGASAIPCVQQGERVVRGQCVADVPSGALGAPVHASIDGIVSEITEQSITVIRG

>SF123566_3336
MSQAIGILELTSIAKGMEAGDAMLKNANVNLLVSKTICPGKFLLMLGGDVGAVQQAIATGTSLAGDMLVDSLVLPNIHASVLPAISGLNSVDKHQAVGIVETWSVAACICAADRAVKASNVTLVRVHMAFGIGGKCYMVVAGDVSDVNNAVTVASESAGEKGLLVYRSVIPRPHESMWRQIVEG

>SF123566_3337
MDRQPPTDRMIQEYVPGKQVTLAHLIANPGKDLFKKLGLQDSISAIGILTITPSEASIIACDIATKSGAVEIGFLDRFTGAVVLTGDVSAVEYALKQVTRTLGEMMRFTACPITRT

>SF123566_3338
MKRIMLIGPSQCGKTSLTQCLRGEALHYQKTQAIVWSPTTIDTPGEYLENRCLYSALLASACEADIIALVLNADAPWSPFSPGFTGPMNRPVIGLVTKADLANPQRISLVESWLVQAGAQNVFITSALENTGVDEMFIFLNAKEPSCLTK

>SF123566_3339
MSHKIMAINAGSSSLKFQLLAMPQGEMICQGLIERIGMSDAQVTLKTPVQKWQETLPVADHREAVTLLLEKLLSLNIIKNLEEIDGVGHRVAHGGESFKDSALVNDETLAEIERLAELAPLHNPVNALGIAVFRQLLPEAPAVAVFDTAFHQTLAEPSFIYPLPWRYYSELGIRRYGFHGTSHKYVSTALAEKLGIPLSALRVVCCHLGNGSSICAIKGGKSVNTSMGFTPQSGVMMGTRSGDIDPSILPWIALREGKTPQQLNQLLNNESGLLGVSGISSDYRDVERAADEGDSQAALALTLFAERIRATIGSYIMQMGGLDALVFTGGIGENSARARAAICHNLNFLGLAVDDEKISATQPSFKLKLRWSKWPL

>SF123566_3340
MAVAQCPASCGELIQGWILGSEKLVSCPVEWYSTVEVSSGSPQVDERPLSRAMVDRLLQHWHYPAHISQDIRIDIQSTIPIAKGMASSTADIAATALATAHFLGHQLDEPTLAQLCVSLEPTDSTLFRQLTLFDHNDASTQIPCEAQPQLDLLVLESPETLRTADYHRIPRQPGLQAGAPALKRAWEKVQEACISQNPYRMGEAATLSAIASQMLLPKPDFDSLLALVEECDLYGVNVAHSGSVVGLMLDRKRHDVDYIKWMLAQKKLTTHWPEQHLLRMVTGGVKLQ

>SF123566_3341
METTKPSFQDVLEFVRLFRRKNKLQREIQDVEKKIRDNQKRVLLLDNLSDYIKPGMSVDAIQGIIASMKSDYEDRVDDYIIKNAEISKERRDISKKLKAMGEVKNGEAKAE

>SF123566_3342
MILKKAKTIGNYNGFTLDNSGFSHALSMQMQLEVWRA

>SF123566_3343
MWRGGDVILGSLLAMLFTGIWPQRAFIHWRIQLAHCVTGYNRVYQAALSPNLLEQPRLEKHLQQLLSDVVKMRGLIVPASKETHIQKSIFEAIQTVNRNLVCMLELQINALWATRTSHFVMLNAHTLRETQLRTQQALLTITHALYEGNPQPVLANTEKLNDTVAELRQLIAEHKGDNVAETPIHGYVWLNMEMARQLELLSHLICRALRK

>SF123566_3344
MRADKSLSPFEIRLYRHYRVVHGIRIALAFLLTFLLVRLLDIPEGTWPLITLVVIMGPISFWGNVVPRALERIGGTILGSVLGLVALRLELLSLPLMLIWCAVAMFLCGWLALGKNPIRRC

>SF123566_3345
MEYEIKQVDKRRIAGFHMVGPWEQTVKQGFEQLVMWVDDKQIVPLEWIAVYYDNPDVVPADKLRCDTVVSVAENFEIPENSEGVILTELAGGEYAIAVARVENHDFATPWYQFFNLLLQDATYQIAAKPCFEIYMNNGMEDGYWDIEMYVPVQPK

>SF123566_3346
MKRRLFIAASLFAISFSSAYATDVASFAPRPPAINAGAWVLMDYTTGQILTAGNEHQQRNPASLTKLMTGYVVDRAIDSHRISPTDIVTVGRDAWAKDNPVFVGSSLMFLKEGDRVSVRDLSRGLIVDSGNDACVALADYIAGGQPQFVAMMNSYVEKLKLKDTHFETVHGLDAPGQHSSAYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNGLLWDKTMNIDGLKTGHTSGAGFNLIASAVDGQRRLIAVVMGAESAKGREDQARKLLQWGQQNFDTVQVLRSGKQVGVERIWYGDKEKISLGTEQDFWMALPKAEVQNIKAKYVLDKKELVAPIAAHQRVGEIELYDRDKLVAHWPLVTLESVSKGSVFSRLSDYFHHKV

>SF123566_3347
MNSIWGAELNYAPDYWPLWLIYAGVVILLMIAGLVMHALLRRMLAPKTAAGEEHRDYLYSLAVRRWHWGNALLFILLLLSGLFGHFSIGPVALMVQVHTWCGFALLAFWIGFVMINATSGNGSHYRVQFSGLITRCLLQTRFYLYGIMKGEAHPFAATAENKFNPLQQLAYLAIMYALVPLLIITGLLCLYPQIIGAGPVVLVLHMVLAIVGILFICAHIYLCTLGDTPGQIFRSMIDGYHRHRSHHAETASHKG

msu.edu Reference: A catalog of the diversity and ubiquity of bacterial microcompartments
Sutter M, Melnicki MR, Schulz F, Woyke T & Kerfeld CA; Nature Communications 12, 3809 (2021)
© www.kerfeldlab.org, 2021