Home BMC loci Shell proteins Help Locus database News Citations Contact

BMC type: PDU1AB


Organism: Klebsiella oxytoca. Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;


   BMC-P    BMC-H/Hp    BMC-Ts/sp    BMC-Tdp    AldDh    PTAC    signature enzyme    AlcDh    regulator    others    no assignment

        DK853_06570 (fasta) HMM10114PocR_1_pdu1 PDU1AB (details)
              DK853_06575 (fasta)
                DK853_06580 (fasta) H_robinEggBlue GRM4 (details)
                      DK853_06585 (fasta) Tsp_greenishBeige PDU1AB (details)
                                  DK853_06590 (fasta) HMMpropdeh1_1_pdu PDU1AB (details)
                                       DK853_06595 (fasta) HMMpropdeh3_1_pdu PDU1AB (details)
                                           DK853_06600 (fasta) HMMpropdeh2_1_pdu PDU1AB (details)
                                                         DK853_06605 (fasta) HMM08841dhact_1_pdu PDU1AB (details)
                                                           DK853_06610 (fasta) HMMpropdeh3_2_pdusml PDU1AB (details)
                                                             DK853_06615 (fasta) H_tan PDU1AB (details)
                                                                DK853_06620 (fasta) H_driedBlood PDU1AB (details)
                                                                    DK853_06625 (fasta) HMMptac_2_mix PDU1AB (details)
                                                                       DK853_06630 (fasta) HMM15953pduput_1_pdu1 PDU1AB (details)
                                                                         DK853_06635 (fasta) P_babyPink PDU1AB (details)
                                                                                DK853_06640 (fasta) HMM01923cobtr_1_pdu PDU1AB (details)
                                                                                          DK853_06645 (fasta) HMMalddh_1_eutpdugrm PDU1AB (details)
                                                                                                  DK853_06650 (fasta) HMM00465alcdh_3_mix PDU1AB (details)
                                                                                                            DK853_06655 (fasta) HMMPduS_1_all PDU1AB (details)
                                                                                                                DK853_06660 (fasta) Ts_dodgerBlue PDU1AB (details)
                                                                                                                  DK853_06665 (fasta) Hp_euts_babyPurple PDU1AB (details)
                                                                                                                     DK853_06670 (fasta) HMM10662PduV_1_mix PDU1AB (details)
                                                                                                                              DK853_06675 (fasta) HMMacetkin_1 PDU1AB (details)
                                                                                                                                    DK853_06680 (fasta) HMM00288_1_pdu PDU1AB (details)
                                                                                                                                            DK853_06685 (fasta) HMMreg00392_2_grm2 EUT2A (details)
                                                                                                                                                     DK853_06690 (fasta)
                                                                                                                                                               DK853_06695 (fasta)

BMC shell protein types:

BMC-H(map on tree)

       H_robinEggBlue
       H_driedBlood
       H_tan

BMC-Hp(map on tree)

       Hp_euts_babyPurple

BMC-P(map on tree)

       P_babyPink

BMC-Ts(map on tree)

       Ts_dodgerBlue

BMC-Tsp(map on tree)

       Tsp_greenishBeige

(complete list of loci)

Protein sequences:

>DK853_06570
MISASTLNSELINKIAQDFAQATSLAVVVVNIHGDEISELFNFTPFCQLMRQHPQHSTRCRMSDRCGGLEASKTDQLCIYRCHAGLTDFSIPLVIAGHLVGFVLCGQVRLSNDVELVDILNVDDRWQADPELLKAFRDVPEMDYSRVIASADLLKLIVENCLKKQLNFVVIKDNPQQPEPARASRVASPHDSKMKKALRYIDAHLSDELRLEDVAAHVYLSPYYFSKLFKKYQGIGFNAWVNHQRMVSAKELLCHSDWSIASIARNLGFSQTSYFCKVFRQAYQVTPQAYRQQINARSQTEPF

>DK853_06575
MNDSLKAQCTAEFLGTGLFLFFGIGCLSALKVAGASLGLWEICIIWGLGISLAVYLTSGISGGHLNPAVTVALWLFACFPGRKVFPYIVSQVAGAFGGAVLAYVLYSTMFTEFESAHHIARGSVESLQLASIFSTYPAASLSIWHAALVEVVITSMLMGMIMALTDDGNGVPKGPLAPLLIGLLVAVIGASTGPLTGFAMNPARDFGPKLFTWMAGWGDIAMTGGRDIPYFIVPIIAPLIGACLGAAIYRYLIGNNLPCNTCKLED

>DK853_06580
MQQEALGMVETKGLTAAIEAADAMVKSANVMLVGYEKIGSGLVTVIVRGDVGAVKAATDAGAAAARNVGEVKAVHVIPRPHTDVEKILPKGISQ

>DK853_06585
MSSNELVEQIMAQVIARVATPEQQAIPTENHPIRETAMAEKSCSLTEFVGTAIGDTLGLVIANVDTALLDAMKLEKRYRSIGILGARTGAGPHIMAADEAVKATNTEVVSIELPRDTKGGAGHGSLIILGGNDVSDVKRGIEVALKELDRTFGDVYGNEAGHIELQYTARASYALEKAFGAPIGRACGIIVGAPASVGVLMADTALKSANVEVVAYSSPAHGTSFSNEAILVISGDSGAVRQAVTSAREIGKTVLATLGSEPKNDRPSYI

>DK853_06590
MRSKRFEALAKRPVNQDGFVKEWIEEGFIAMESPNDPKPSIKIVNGAVTELDGKPVSDFDLIDHFIARYGINLNRAEEVMAMDSVKLANMLCDPNVKRSEIVPLTTAMTPAKIVEVVSHMNVVEMMMAMQKMRARRTPSQQAHVTNVKDNPVQIAADAAEGAWRGFDEQETTVAVARYAPFNAIALLVGSQVGRPGVLTQCSLEEATELKLGMLGHTCYAETISVYGTEPVFTDGDDTPWSKGFLASSYASRGLKMRFTSGSGSEVQMGYAEGKSMLYLEARCIYITKAAGVQGLQNGSVSCIGVPSAVPSGIRAVLAENLICSSLDLECASSNDQTFTHSDMRRTARLLMQFLPGTDFISSGYSAVPNYDNMFAGSNEDAEDFDDYNVIQRDLKVDGGLRPVREEDVIAIRNKAARALQAVFAGMGLPPITDEEVEAATYAHGSKDMPERNIVEDIKFAQEIINKNRNGLEVVKALAQGGFTDVAQDMLNIQKAKLTGDYLHTSAIIVGDGQVLSAVNDVNDYAGPATGYRLQGERWEEIKNIPGALDPNEID

>DK853_06595
MEINEKLLRQIIEEVLSEMKGSDKPVSFNAPAASAAPQATPPAGDGFLTEVGEARQGTQQDEVIIAVGPAFGLAQTVSIVGIPHKSILREVIAGIEEEGIKARVIRCFKSSDVAFVAVEGNRLSGSGISIGIQSKGTTVIHQQGLPPLSNLELFPQAPLLTLETYRQIGKNAARYAKRESPQPVPTLNDQMARPKYQAKSAILHIKETKYVVTGKNPQELRVAL

>DK853_06600
MNTDAIESMVRDVLSRMNSLQGEAPTAAPAADGASRSAKVSDYPLANKHPEWVKTATNKTLDDFTLENVLSNKVTAQDMRITPETLRLQASIARDAGRDRLAMNFERAAELTAVPDDRILEIYNALRPYRSTKEELLAIADDLESRYQAKICAAFVREAATLYVERKKLKGDD

>DK853_06605
MRYIAGIDIGNSSTEVALATLNEAGTLTITHSALAETTGIKGTLRNVFGIQEALALVARGAGIAVSDISLIRINEATPVIGDVAMETITETIITESTMIGHNPKTPGGAGLGVGITITPQELLTRPADAPYILVVSSAFDFADIASVINASLRAGYQITGVILQRDDGVLVSNRLEKPLPIVDEVLYIDRIPLGMLAAIEVAVPGKVIETLSNPYGIATVFNLNAEETKNIVPMARALIGNRSAVVVKTPSGDVKARAIPAGNLELLAQGRSVRVDVAAGAEAIMKAVDGCGKLDNVTGESGTNIGGMLEHVRQTMAELTNKPSSEIFIQDLLAVDTSVPVSVTGGLAGEFSLEQAVGIASMVKSDRLQMAMIAREIEQKLNIDVQIGGAEAEAAILGALTTPGTTRPLAILDLGAGSTDASIINPKGEIIATHLAGAGDMVTMIIARELGLEDRYLAEEIKKYPLAKVESLFHLRHEDGSVQFFSTPLPPAVFARVCVVKPDELVPLPGDLALEKVRAIRRSAKERVFVTNALRALRQVSPTGNIRDIPFVVLVGGSSLDFEVPQLVTDALAHYRLVAGRGNIRGSEGPRNAVATGLILSWHKEFAHGQ

>DK853_06610
MDSNHSAPAIVIAAIDGCDGLWREVLLGIEEEGIPFLLQHHPAGDVVDSAWQAARSSPLLVGIACDRHTLVVHYKNLPASAPLFTLMHHQDSQAQRNTGNNAARLVKGIPFRDLNS

>DK853_06615
MNNALGLVETKGLVGAIEAADAMVKSANVQLVGYEKIGSGLVTVMVRGDVGAVKAAVDAGSAAASVVGEVKSCHVIPRPHSDVEAILPKSA

>DK853_06620
MANKEHRVKQSLGLLEVCGLALAISCADIMAKSASITLVALEKTNGSGWTVIKITGDVASVQAAITTGAQFAEQRNGLVAHKVIARPGEGILPAEAPPSSVMEPEPEESETANVVSEAPAEEPLQQQGVVSCNLCLDPKCPRQKGEPRTLCIHPGKRGEA

>DK853_06625
MDKQLLESTVSKVLDEMRLRPIPLGVSNRHIHLSASDYERLFPGHPISEKKALLQPGQYAAEQTVTLVGPKGQLKNVRLLGPLRSVSQVEISRTDARTLGVAAPLRMSGDLKGTPGIRLVSPYGELTLSSGVIVAQRHIHMSPLDALILRVSHGDKVSVAIEGDERGLIFNNVAIRVSPDMRLEMHIDTDEANAAGADNPQAFARLVGPR

>DK853_06630
MNGEVLQRIVEEIVSRLQRRAHSTATLSVAQLRDADCPGLFSQHASLRILLVDLPLLGQLTEAETDDPAARKIHDALAFGIRVQLTLHSQLLPVIPVKKLARLPAIFTDERGLPLILHAGSVLSYRDVAQLGQCRLVIHRKCIVTALAREAAQARHIQLIKQE

>DK853_06635
MHLARVTGAVVSTQKSPSLIGKKLLLVRRVSADGELPASPTSGDEVAVDSVGAGIGELVLLSGGSSARHVFSGPNEAIDLAVVGIVDTLSR

>DK853_06640
MAIYTRTGDAGTTSLFTGQRVSKTHPRVEAYGTLDELNAALSLCACAAADENHRALLEAIQQQLFWFSAELASDSERPSPKQRYISSEEISALEAAIDRAMARVEPLHSFILPGRCEAASRLHFARTLARRAERRLVELAAEVNVRQVLMRYINRLSDCLYALARAEDSDAHQNNIIREVSRRYLAVTQPSRSKETTPLDLSFHDLHQLTRAAVERAQQLQVPVVISIVDAHGTETVTWRMPDALLVSSELAPKKAWTAVAMKTATHELSEAVQPGAALYGLETHLQGKVVTFGGGYALWRDGSLIGGLGISGGSVEQDMDIAQTAIAAINVGTHQ

>DK853_06645
MNTSELETLIRTILSEQLTPAQTPNPAQGKGIFQSVSEAIDAAHQAFLRYQQCPLKTRSAIISAMRQELTPHLAALAEESANETGMGNKEDKFLKNKAALDNTPGVEDLTTTALTGDGGMVLFEYSPFGVIGSVAPSTNPTETIINNSISMLAAGNSVYFSPHPGAKKVSLKLISMIEEIVFRCCGIRNLVVTVAEPTFEATQQMMAHPRIAVLAITGGPGIVAMGMKSGKKVIGAGAGNPPCIVDETADLVKAAEDIINGASFDYNLPCIAEKSLIVVESVAERLVQQMQTFGALLLSPADTDKLRAACLPEGQANKKLVGKSPSAMLEAAGIAVPSKAPRLLIALVNADDPWVTSEQLMPMLPIVKVSDFDSALALALKVEEGLHHTAIMHSQNVSRLNLAARTLQTSIFVKNGPSYAGIGVGGEGFTTFTIATPTGEGTTSARTFARSRRCVLTNGFSIR

>DK853_06650
MKTFSLQTRLYSGQGSLAVLKRFTNKHIWIICDGFLARSPLLETLRQALPADNRISVFSEITPDPTIHTVVQGIAQMQALQPQVVIGFGGGSAMDAAKAIVWFSQQSGISIETCVAIPTTSGTGSEVTSACVISDPDKGIKYPLFNNALYPDMAILDPELVVSVPPQITANTGMDVLTHALEAWVSPHASDFTDALAEKAAKLVFQYLPTAVEKGDCVATRGKMHNASTLAGMAFSQAGLGLNHAIAHQLGGQFHLPHGLANALLLTAVIRFNAGHPRAGKRYARLAKACGFCPADASDSTAINALIQQIERLKQRCALPSLAVALKEGRAEYSARIPAMVQAALADVTLRTNPRPASAGEIQELLEELL

>DK853_06655
MSTAVNAVEMARSAEEIRERVRAAGVVGAGGAGFPAHVKLQAQVEIFLVNAAECEPMLKVDQQLMWQQAARLVRGVQYAMTATGAREGVIALKEKYRRAIDALTPLLPAGIRLHILPDVYPAGDEVLTIWLATGRRVAPAALPASVGVVVNNVQTVLNIARAVEQQFPVTRRTLTVNGAVARPLTVTVPIGMSLREVLALAGGATVDDPGFINGGPMMGGLMTALDSPVTKTTGGLLVLPKSHPLIQRRMQDERTVLSVARTVCEQCRLCTDLCPRHLIGHELSPHLLVRAVNFHQAATPLLLLSALTCSECNVCESVACPVGISPMRINRMLKRELRAQNQRYEGPLYPADEMAKYRLVPVKRLIAKLGLSPWYQEAPLVEDEPAVETVTLQLRQHIGASAVANVAVGERVTRGQCVADIPAGALGAPVHVSIDGVVAAISEQAITVVRG

>DK853_06660
MSQAIGILELTSIAKGMELGDAMLKSANVNLLVSKTICPGKFLLMLGGDIGAIQQAIETGTSQAGEMLVDSLVLANIHPSVLPAISGLNSVDKRQAVGIVETWSVAACISAADRAVKGSNVTLVRVHMAFGIGGKCYMVVAGDVSDVNNAVTVASESAGEKGLLVYRSVIPRPHEAMWRQMVEG

>DK853_06665
MERQPTTDRMIQEYVPGKQVTLAHLIANPGKDLFKKLGLQDAVSAIGILTITPSEASIIACDIATKSGAVEIGFLDRFTGAVVLTGDVSAVEYALKQVTRTLGEMMQFTTCSITRT

>DK853_06670
MKRLMLIGPSQCGKTSLTQGLRGEALHYKKTQAIEWSPMAIDTPGEYLENRCLYSALLTSACEADVIALVLNADAQWSPFSPGFTAPMNRPTIGLVTKADLADAQRISLIGEWLRQAGAQQIFITSALNNLGLDAVLDFLNSKEPLCLTK

>DK853_06675
MSYKIMAINAGSSSLKFQLLEMPQGDMLCQGLIERIGMANAQVTLKTPAQKWQETAPVADHREAVTLLLEKLLDHRIIQSLQDIDGVGHRVAHGGERFKDSTPVTDETLAEIERLAELAPLHNPVNALGIKVFRQLLPDAPSVAVFDTAFHQTLDERAFIYPLPWRYYSELGIRRYGFHGTSHKYVSATLAEKLGVPLSALRVVCCHLGNGSSVCAIKGGRSVNTSMGFTPQSGVMMGTRSGDIDPSILPWLALHEGKTPEQLNQLLNNESGLLGVSGISHDYRDVEQAADSGNRQAALALSLFAERIRATIGSYIMQMGGLDALIFTGGIGENSARARSAICHNLNFLGLSVDEEKNQHNATFIQAENAMVKVAVINTNEELMIARDVMRLALPEAQTLTVSA

>DK853_06680
MAVAQCPASCGELIQGWILGSEKLVSCPVDWYSTVEVDYGSPRADERPLARAMVDQLLSYWRYPPALSKEIRIDICSTIPVAKGMASSTADIAATAVAAAHHLGHPLDEPTLARLCVSLEPTDSTLFRQLTLFDHNTAATQIACDSQPRLDLLVLESPATLLTTDYHRLPRLEKLHAHSASLQLAWEKVQLACETDNPRRMGEAATLSAVASQHLLPKPGFDTLRGLVEECDLYGINVAHSGSVVGLMLDRQRHDIEYLQRRLEETRLSELWPRQHLLRMVQGGVELR

>DK853_06685
MALLKSAHGGNIREAAALMGISAEQLLDFSANINPLGMPESLKRAILNNMDCAERYPDVEYQQLHLALAEHHHIPASSILAGNGETEAIFTLVQGLKPRQAMIVTPGFAEYRRALQSVECAVREFLLREEDGWQLTGAILDALTPDLDCLFLCTPNNPTGLLPDRRLLALIAERCQSLDIALILDEAFIDFIPDEPGFIPLLAHNPHVWVLRSLTKFYAIPGLRLGYLVNGDARAVARMRERQMPWSINAFAALAGEIILQDSAYQQKTWQWLAEEGQRFYHQLRHIPGLTVYPGQANYLFLRCDVADLDLQYAMLQQHILIRSCANYPGLDGRYFRVAIRSQQENTRLLTAFRRVFNE

>DK853_06690
MSGYKSGLSRRRFLQGAGAMWLMSVSPVGLAAAAQVVAVRVWPSSTYTRVTVESNHILKYRQFALSNPERVVVDLEGVNLNSVLKGMGNQIRSDDPYIQSARVGQFDPQTVRMVFELKQNVKPQLFALAPVAGFKERLVMDLYPSNATDVQDPLLALLEDYNKGDLQRQVPPAESGPKPGKAGRDRPIVIMLDPGHGGEDSGAVGKYRTREKDVVLQIARRLRALIEKEGNMKVYMTRNEDVFIPLKVRVAKAQKQRADLFVSIHADAFTSRQPSGSSVFALSTKGATSTAAKYLAQTQNASDLIGGVSKSGDRYVDHTMFDMVQSLTIADSLKFGKAVLEKMGNINNLHKNQVEQAGFAVLKAPDIPSILVETAFISNIEEERKLKTAKFQQQVAESILAGIKAYFADGATLARRG

>DK853_06695
MVKERRTELVEGFRHSVPYINAHRGKTFVIMLGGEAIEHDNFSSIVNDIGLLHSLGIRLVVVYGARPQIDANLAEHRHEPVYHKQTRVTDAKTLELVKQAAGMLQLEITARLSMSLNNTPLQGAHINVVSGNFIIAQPLGVDDGVDYCHSGRIRRIDEEAIHRQLDNGAIVLMGPVAVSVTGESFNLTSEEIATQLAIKLKAEKMIGFCSSQGVYNQDGEIVPELFPNEAQARVEEMEADEDYSSGTVRFLRGAVKACRSGVRRCHLISYQENGTLLQELFSRDGIGTQIVMESAEQIRRATINDIGGILELISPLEQQGILVRRSREQLEMEIDKFTIIQRDNTTIACAALYPFPEEKIGEMACVAVHPDYRSSSRGEVLLERIAAQAKQMGLSKLFVLTTRSIHWFQERGFTPVDVDLLPESKKEMYNYQRRSKVLMADLA

msu.edu Reference: A catalog of the diversity and ubiquity of bacterial microcompartments
Sutter M, Melnicki MR, Schulz F, Woyke T & Kerfeld CA; Nature Communications 12, 3809 (2021)
© www.kerfeldlab.org, 2021