BMC type: PVMlike
(complete list of loci)
(list of all HMMs in BMC type)
Example locus:
Organism: Acetoanaerobium sticklandii (strain ATCC 12662 / DSM 519 / JCM 1433 / Bacteria; Firmicutes; Clostridia; Clostridiales;
BMC-P
BMC-H/Hp
BMC-Ts/sp
BMC-Tdp
AldDh
PTAC
signature enzyme
AlcDh
regulator
others
no assignment
CLOST_0671
CLOST_0672 HMMreg00455_1_GRM5 PVMlike (HMM details)
CLOST_0673 HMMaldol_2_pvm1 PVMlike (HMM details)
CLOST_0674 HMMalddh_1_eutpdugrm PVMlike (HMM details)
CLOST_0675 H_mint PVMlike (HMM details)
CLOST_0676 H_cyan PVMlike (HMM details)
CLOST_0677 H_evergreen PVMlike (HMM details)
CLOST_0678 H_cyan PVMlike (HMM details)
CLOST_0679 HMMptac_3_eut2 PVMlike (HMM details)
CLOST_0680 P_ocean PVMlike (HMM details)
CLOST_0681
CLOST_0682
CLOST_0683
BMC shell protein types:
H_evergreen
H_mint
2x H_cyan
P_ocean
Reference:
BMC Caller: a webtool to identify and analyze bacterial microcompartment types in sequence data