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BMC loci
Shell proteins
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BMC type:
PDU1AB
(
complete list of loci
) (
list of all HMMs in BMC type
)
Example locus:
Organism: Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720). Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
BMC-P
BMC-H/Hp
BMC-Ts/sp
BMC-Tdp
AldDh
PTAC
signature enzyme
AlcDh
regulator
others
no assignment
STM2035
STM2036 HMM10114PocR_1_pdu1 PDU1AB (
HMM details
)
STM2037
STM2038 H_robinEggBlue GRM4 (
HMM details
)
STM2039 Tsp_greenishBeige PDU1AB (
HMM details
)
STM2040 HMMpropdeh1_1_pdu PDU1AB (
HMM details
)
STM2041 HMMpropdeh3_1_pdu PDU1AB (
HMM details
)
STM2042 HMMpropdeh2_1_pdu PDU1AB (
HMM details
)
STM2043 HMM08841dhact_1_pdu PDU1AB (
HMM details
)
STM2044 HMMpropdeh3_2_pdusml PDU1AB (
HMM details
)
STM2045 H_tan PDU1AB (
HMM details
)
STM2046 H_driedBlood PDU1AB (
HMM details
)
STM2047 HMMptac_2_mix PDU1AB (
HMM details
)
STM2048 HMM15953pduput_1_pdu1 PDU1AB (
HMM details
)
STM2049 P_babyPink PDU1AB (
HMM details
)
STM2050 HMM01923cobtr_1_pdu PDU1AB (
HMM details
)
STM2051 HMMalddh_1_eutpdugrm PDU1AB (
HMM details
)
STM2052 HMM00465alcdh_3_mix PDU1AB (
HMM details
)
STM2053 HMMPduS_1_all PDU1AB (
HMM details
)
STM2054 Ts_dodgerBlue PDU1AB (
HMM details
)
STM2055 Hp_euts_babyPurple PDU1AB (
HMM details
)
STM2056 HMM10662PduV_1_mix PDU1AB (
HMM details
)
STM2057 HMMacetkin_1 PDU1AB (
HMM details
)
STM2058 HMM00288_1_pdu PDU1AB (
HMM details
)
STM2059
BMC shell protein types:
BMC-H (
map on tree
)
H_tan
H_robinEggBlue
H_driedBlood
BMC-Hp (
map on tree
)
Hp_euts_babyPurple
BMC-P (
map on tree
)
P_babyPink
BMC-Ts (
map on tree
)
Ts_dodgerBlue
BMC-Tsp (
map on tree
)
Tsp_greenishBeige
Reference:
BMC Caller: a webtool to identify and analyze bacterial microcompartment types in sequence data