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BMC loci
Shell proteins
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BMC type:
GRM6
(
complete list of loci
) (
list of all HMMs in BMC type
)
Example locus:
Organism: Clostridium thermopalmarium DSM 5974. Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae;
BMC-P
BMC-H/Hp
BMC-Ts/sp
BMC-Tdp
AldDh
PTAC
signature enzyme
AlcDh
regulator
others
no assignment
CPAL_18150
CPAL_18160 HMMgre_1_grms GRM6 (
HMM details
)
CPAL_18170 HMMgreae_1_grms GRM6 (
HMM details
)
CPAL_18180 HMMreg00072_5_grm1 GRM6 (
HMM details
)
CPAL_18190 HMM10114PocR_2_grm GRM6 (
HMM details
)
CPAL_18200 H_robinEggBlue ETU (
HMM details
)
CPAL_18210 Tsp_pistachio GRM6 (
HMM details
)
CPAL_18220 H_pumpkin GRM6 (
HMM details
)
CPAL_18230 HMMptac_3_eut2 GRM6 (
HMM details
)
CPAL_18240 HMM06723EutJMreB_1_grm GRM6 (
HMM details
)
CPAL_18250 HMM02441_04 GRM6 (
HMM details
)
CPAL_18260 HMMalddh_2_egra GRM6 (
HMM details
)
CPAL_18270 P_clearBlue GRM6 (
HMM details
)
CPAL_18280 HMM00465alcdh_3_mix GRM6 (
HMM details
)
CPAL_18290
BMC shell protein types:
BMC-H (
map on tree
)
H_robinEggBlue
H_pumpkin
BMC-P (
map on tree
)
P_clearBlue
BMC-Tsp (
map on tree
)
Tsp_pistachio
Reference:
BMC Caller: a webtool to identify and analyze bacterial microcompartment types in sequence data