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BMC loci
Shell proteins
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BMC type:
GRM3A
(
complete list of loci
) (
list of all HMMs in BMC type
)
Example locus:
Organism: Clostridium beijerinckii NRRL B-598. Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae;
BMC-P
BMC-H/Hp
BMC-Ts/sp
BMC-Tdp
AldDh
PTAC
signature enzyme
AlcDh
regulator
others
no assignment
X276_05505
X276_05510 HMM00860tp_1_bufgrm GRM3A (
HMM details
)
X276_05515
X276_05520 HMM03928Haemd_2_grm GRM3A (
HMM details
)
X276_05525 Hp_euts_steel GRM3A (
HMM details
)
X276_05530 HMM10662PduV_1_mix GRM3A (
HMM details
)
X276_05535 HMM01965_1_grm3 GRM3A (
HMM details
)
X276_05540 HMMgre_1_grms GRM3C (
HMM details
)
X276_05545 HMMgreae_1_grms GRM3A (
HMM details
)
X276_05550 Tsp_aqua GRM3A (
HMM details
)
X276_05555 H_robinEggBlue GRM3A (
HMM details
)
X276_05560 HMM02441_05 GRM3A (
HMM details
)
X276_05565 H_driedBlood GRM3A (
HMM details
)
X276_05570 P_murkyGreen GRM3A (
HMM details
)
X276_05575 HMMalddh_1_eutpdugrm GRM3A (
HMM details
)
X276_05580 HMM00465alcdh_3_mix GRM3A (
HMM details
)
X276_05585 HMM10114PocR_2_grm GRM3A (
HMM details
)
X276_05595 HMMadometsyn_1_grm GRM3A (
HMM details
)
X276_05600
X276_05605 H_robinEggBlue GRM3A (
HMM details
)
X276_05610 HMMptac_3_eut2 GRM3A (
HMM details
)
X276_05615 HMM06723EutJMreB_1_grm GRM3A (
HMM details
)
X276_05620 HMMalddh_1_eutpdugrm GRM3C (
HMM details
)
X276_05625 HMMPduS_1_all MUF1 (
HMM details
)
X276_05630 Ts_paleMagenta GRM3A (
HMM details
)
X276_05640
X276_05645
BMC shell protein types:
BMC-H (
map on tree
)
2x H_robinEggBlue
H_driedBlood
BMC-Hp (
map on tree
)
Hp_euts_steel
BMC-P (
map on tree
)
P_murkyGreen
BMC-Ts (
map on tree
)
Ts_paleMagenta
BMC-Tsp (
map on tree
)
Tsp_aqua
Reference:
BMC Caller: a webtool to identify and analyze bacterial microcompartment types in sequence data