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BMC type: PVMlike


Organism: Clostridium lavalense. Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.


   BMC-P    BMC-H/Hp    BMC-Ts/sp    BMC-Tdp    AldDh    PTAC    signature enzyme    AlcDh    regulator    others    no assignment

            SAMN05216313_105168 (fasta)
                 SAMN05216313_105169 (fasta)
                    SAMN05216313_105170 (fasta)
                      SAMN05216313_105171 (fasta)
                                     SAMN05216313_105172 (fasta)
                                          SAMN05216313_105173 (fasta)
                                                   SAMN05216313_105174 (fasta)
                                                                 SAMN05216313_105175 (fasta)
                                                                           SAMN05216313_105176 (fasta)
                                                                                    SAMN05216313_105177 (fasta) HMM00465alcdh_3_mix PVMlike (HMM details)
                                                                                      SAMN05216313_105178 (fasta) P_ocean PVMlike (HMM details)
                                                                                           SAMN05216313_105179 (fasta) HMMptac_3_eut2 PVMlike (HMM details)
                                                                                             SAMN05216313_105180 (fasta) H_cyan PVMlike (HMM details)
                                                                                                SAMN05216313_105181 (fasta) H_evergreen PVMlike (HMM details)
                                                                                                  SAMN05216313_105182 (fasta) H_cyan PVMlike (HMM details)
                                                                                                    SAMN05216313_105183 (fasta) H_mint PVMlike (HMM details)
                                                                                                               SAMN05216313_105184 (fasta) HMMalddh_1_eutpdugrm PVMlike (HMM details)
                                                                                                                     SAMN05216313_105185 (fasta) HMMreg00455_1_GRM5 PVMlike (HMM details)
                                                                                                                         SAMN05216313_105186 (fasta)
                                                                                                                           SAMN05216313_105187 (fasta)
                                                                                                                                        SAMN05216313_105188 (fasta)
                                                                                                                                                   SAMN05216313_105189 (fasta)
                                                                                                                                                     SAMN05216313_105190 (fasta)
                                                                                                                                                        SAMN05216313_105191 (fasta)
                                                                                                                                                           SAMN05216313_105192 (fasta) HMMspu02502_1_spu SPU1 (HMM details)
                                                                                                                                                                 SAMN05216313_105193 (fasta) HMM00121_isom_1_spu SPU4 (HMM details)

BMC shell protein types:

BMC-H(map on tree)

       H_evergreen
      2x H_cyan
       H_mint

BMC-P(map on tree)

       P_ocean

(complete list of loci)

Protein sequences:

>SAMN05216313_105168_UniProt_A0A1I0DZL9
MIDDAIRGLVEYGLETGLIEREDAIYARNQILDVMGLSEYREPETPKAYAGLEEILKELLDDACARGLLESDSVVYRDLFDTRLMNCLMPRPSEVNREFWKRYGQSPETATEYYYKLSQDSDYIRRYRIKKDMKWTADTRYGRLDITVNLSKPEKDPKAIAAAKLAKQSGYPKCQLCMENVGYAGRTNHPARNNHRVIPITVNGGEWGFQYSPYVYYNEHCIVFNGEHIPMKIERATFVKLFDFIRLFPHYFLGSNADLPIVGGSILSHDHFQGGHYTFAMAKAPIEKYFTLEGFEDVEAGIVFWPMSVLRLRCGDSDRLVELGDKVLAAWRGYSDESAFIFAETDGEPHNTITPIARKVGDKFELDLVLRNNLTTEEFPLGVYHPHQELHHIKKENIGLIEVMGLAVLPSRLKKELADLADFIAEGRDIRGDGELAKHADWVEEFLPRYAAAGVAVTRENVNDVLRTEVGNVFARVLEDAGVYKCDENGRAAFGRFLASVGFAEA

>SAMN05216313_105169_UniProt_A0A1I0E1M9
MERRKNMDARDVALYGLLIALAFVLSYVESLIPISLGVPGVKLGLANLAVIAALYTVGAGGAAFISLVRIVLMGFTFGTPSMILYSLAGGILSLLVMAFLKRFKVFGMVGISVAGGAAHNIGQIAVAAAVVEQAALFAYLPVLLAAGTIAGSLIGLLGGMVVQRIKRAVSR

>SAMN05216313_105170_UniProt_A0A1I0DZS5
MSKTQMSAVKKNYFGLGIMAILSALVIAVSGPLYQSMSNYPDMPLADGVYTYKDEQPDDNGFYSMVTVTVQNGRITACTWDCVNDENIGKRQLSVEGHYVMTENGPTWKDQADALASYVLHHQTTGGLINAEGYAMDAVSSVSINAYPFVNGLSDCLDQAAIR

>SAMN05216313_105171_UniProt_A0A1I0DZD0
MKAKGPSLPRRDLILILAILSVAGIWYGITRYQALKGPSEVAQVTVDGKLVETLDLSVNATVTITGAGGGTNVLVVQDGEIWCSEASCPDKLCVKQGKKHLSTDTIVCLPNKMVVTVTGTD

>SAMN05216313_105172_UniProt_A0A1I0E1T9
MKLVELKCPACNGTVKLDPEHPGEAVCEYCKTRYMVEQESGDEYKLGNFGSRSVGDLPPHSFQEVKPRTSLPQETQKVHEEERKRFVIIAVAAAVVFVAAIAVSARGSAGKKSSAKATSAVVETAIAAEPTQAPAKPVVWSQGMEQVILGIYGRTPDQVSEQELMKLRYLELKPGLWDTHTDRKYFRVSYGLDGDLGADGEMAIHTFEGDLPAGMTMGWELFNDFSCLRALKGLETLSLHSTLKPGDLEGLEQLRTLGVQYISPDEVAALVDDPGQLTGLIYDYNQTSLEGIGQFTGLERLELHGSDDLTDIKDLASLKNLKSLSMEYCPNLTDFSVFFTMSGLTELRLDLEHVKDISFVNSMPQLERFALDDSQCISIAPLSSCENLKELSLTSNYELPDYSAITGLTGLESLTIDKYSNQPDPDLSGMTNMKTLTLAGFNGCSFLRSMGGLTDLTIAGYCIDDPGAFSGLTQLERLKGTKSWEYLNSVDFLANLPALTQLDLSGTTFYTDISALLNKEGLVSLNLNGASMEINFSRLKDNPGLLSLSMNGVKLYKNVKADRYGGISMVNWDDVALDAELGFLSHYPGLTDLSLADNKLAQIQPAATLPLLETLDISKNYVTDLNPLAGLEHLKKVDGRENPVSNWQVVGEKVTVIR

>SAMN05216313_105173_UniProt_A0A1I0DZH5
MTLERSEIRRRLEELAEPGYRDFNRKLLPGVEDMLGVRTPALRRLAREIAKGDWRGYVDQVRTAWQQGEACHEERLLWGMVVGAGAGAWEEAAAYIRDFVPVIDNWAVCDSFCGTLKIAGKHKAEMWELLTPYLDSELEYECRFGAVMLLDYFIDEDYVDRALGALDRIRSQAYYSRMAVAWAVSIFYVKMPERVMPYLEKNHLDDWTYNKALQKICESLRIDGQTRAVIRSMKRQAGPAGGIDRREMP

>SAMN05216313_105174_UniProt_A0A1I0E1I3
MTKKQKKPLELYIHIPFCARKCLYCDFLSFRTLAAVHEAYVEQLIREIEAEGASCQEYQVVTVFIGGGTPSVLEPELIRDVCLAVRRAFDVAQDAEITIEVNPGTLLQNKLHIYRAAGINRVSIGLQSADNRELENLGRIHSFEEFLKSFQCARMAGFANINVDLMSGIPGQTLESWRNTLKKVTMLKPEHISAYSLIIEEGTPFWDRYGAGCEKTAAKSAHQPGTCPGEAPDRFGLRRRDYPELPDEEEENRIYHLTRTFLAEQGYERYEISNYARPGFACRHNVGYWTEVEYLGLGLGASSFLGGCRFCNERDLERYLGLDFAAEDWAERLRPQFTRLSREARMEEFMFLGLRMIRGISEIDFVATFGVKLDSVYGPVIERLVKNGLLRREGVWLSLTEWGMDVSNFVLGEFLLTSA

>SAMN05216313_105175_UniProt_A0A1I0E1Z8
MSIVDQSKIRNFCIIAHIDHGKSTLADRIIEKTGLLTSREMQEQILDNMDLERERGITIKSQAVRTVYKAKDGCEYIFNLIDTPGHVDFNYEVSRSLAACDGAILVVDASQGIEAQTLANVYLALDHDLDVFPVINKVDLPSAQPDHVAAEIEDVIGLDASDAPRVSAKTGENVEAVLEAIVEKIPAPTGDPEAPLQALIFDSIYDSYKGVIIFCRVMEGTVKRGTPIRLMATGAEEDVVEVGYFGAGQFIPCDELSAGMVGYITASIKNVRDTQVGDTVTNRDNPCAAPLPGYKKVTSMVYCGLYPADGAKYNDLRDALEKLQLNDASLFYEPETSVALGFGFRCGFLGLLHLEIIQERLEREYNLDLVTTAPSVVYRVHKNNGEMIELTNPTNLPDPTEIDYMEEPIVSAEIMVTTEFVGSIMTLCQERRGVYLGMEYIETTRALLKYELPLNEIIYDFFDALKSRSRGYASFDYELKGYERSELVKLDILVNREEVDALSFIVHAESAYDRGRRMCEKLKDEIPRHLFEIPIQAAIGGKIIARETVKAVRKDVLAKCYGGDISRKRKLLEKQKEGKKRMRQIGNVEIPQKAFMSVLKLDDE

>SAMN05216313_105176_UniProt_A0A1I0E030
MRRRGLAGGIRWFAAGTGLILILLLAGRAAGTAAENLDRDACRRAVETGGRWLVDYVWHQARPGSGGTGGRTGDGWETGDPDPAYRQYEAVKTFYEEHQYLAWYGNEETGETKAENGEAQNGGTTAGQAGDNGADQNAGGTQALAQGETGAGAVPAGAALVGVTSRAVTGPTYVMEQLADYDFLMKHFYSVHTSTTAGRDEISAARLLGEDLSIGEDNSQPQILIYHTHSQEAFKDSGPGETVVGIGNYLTELLTAKGYNVIHDTSVYDLVDGKLDRSKAYTYAYDGISKILEENPSVQVVLDIHRDGVGESLHLVTDVDGKPTAQIMFFNGMSQTPEGPIEYLQNPYREQNLAFSFQMQLDAQAYYPGFTRKIYLKGLRYNLHLRPRSALIEVGAQTNTYEEARNAMEPLSELLDMVLQSSRKNDTIQ

>SAMN05216313_105177_UniProt_A0A1I0DZU6
MGRERINAVTTSFFGRGSIGLLPGELKKRGYRRGLIVTDRFLFEHKAADRVGEQILTAGAEYAVFYLVQPNPTIQVVNDCIQAAKALEVDFLVAVGGGSAIDTAKAVSIVIANGGRVEDYEGVDLSARPGLPIVAVNTTAGTGSEVTSFYIVTNPATHSKMCIMDTNCMVSIAVNDVDFMMTMPPGLTASTGMDAMTHAIEAVLSVRATPFTDKDAMWAIRVIKDYLPAAVKDGQDVKAREMMAYAEYTAGMAFSNAGLGIVHAMAHALGGHFNLPHGICNSVLLPYGMRFNGKSAEASGRFQRIAEALELPGAAKMADGKAAEACVRYVRTFSKSLGMPQTLKELRGVDPEKFGELADLAVRDFCMGDNLVRADREQVMRVYGEAWKGGG

>SAMN05216313_105178_UniProt_A0A1I0E275
MILGTIRGTVVSTRKCRNLVGFKLLLVEPYFGDKSQLFVAADTIGAGIGELVLVTTDETTQHALDRSAPVDAYVVGIVDAPPQLGK

>SAMN05216313_105179_UniProt_A0A1I0E1T3
MWDRENMAALVAELVTAQVREFAGGYYQVPVGISARHIHLTREDVEALFGPGHRLRPMKPLSQPGQFACEEQVELTGPRGSIARVRVLGPERPASQVELSGTDCLKLGIDAPVRTSGQLSGTPGITVKGPAGVLELGAGLIIADRHIHMTPEDARWFGVEDGERVSVRVGGPRGGLMGQVVIRVSEKGRLDFHVDTDDANAFRLKQGQLLELVKEGTR

>SAMN05216313_105180_UniProt_A0A1I0DZX2
MAEGIKRGMLALGMIETRGLTASIEAADAMLKAADVELVGTEKIGSGLVTVMVQGDVGAVKAAVEAGQESASRIGELVAVHVIPRPHGSVGAILPFLK

>SAMN05216313_105181_UniProt_A0A1I0E0E5
MINLRQSAIGVLEVSYFANTVVVVDQALKAAQVELVSCHKRLGGKMCHTVLAGSTSGVEAAMEAARAAGRIVGEHNVKVAVTISNPHPQVLKLLNMIESHEAEKAAAGEKQTAADHKTGENPRDLKRERRTKNGRGN

>SAMN05216313_105182_UniProt_A0A1I0E0V3
MAATAIGMIETRGLTASIEAADAMLKAADVEMVGTEKIGSGLVTVIVTGEVGAVKAATEAGEAAASRIGELVAVHVIPRPHDDIRKILPGLK

>SAMN05216313_105183_UniProt_A0A1I0E076
MAIGFLECAGYGAVLYAMDRACKAADIEIIGIDTINPKDASAFIPLTAQVKFAGSVDDVKVACEVARRAALKLNRPEDVLVEVIERPYDGTKALSCISKVKFQEEAE

>SAMN05216313_105184_UniProt_A0A1I0E0H7
MEIETRDIERIVRQVMAVMEQQGTIAGGAYPPAPGTPAPRGDNGVFERVEDAIDAAYAAGREWAFHYKVEDRRRVIEAIRVMARENARTLAQMVRDETGMGRMEDKVEKHLAVADKTPGVECLTTDAISGDGGLMIEEYAPFGVIGAITPSTNPTETVIHNTISMIAGGNSVVFNVHPGAKKCCAFCLQLLHKTIVENGGPANLITMQREPTMDAVNKMTSSPKIRLMVGTGGMGMVNALLRSGKKTIGAGAGNPPVIVDDTADVKLAARELYWGASFDNNLFCFAEKEVFVMEASADGLIRGLVEQGAYLLTPAETEAIVKLALIQKDGKYEVNKKWVGKDAGLFLKAIGVSGHENTRLLICDVPKCHPYVMVEQLMPVLPIVRCRTFDECIQCSVEAEQGNRHTSSIFSTNVYNMTKFGKEIETTIYVKNGATLRGLGIGGEGHTTMTIAGPTGEGLTCARSFTRRRRCMLAEGGLRII

>SAMN05216313_105185_UniProt_A0A1I0E110
MLAVTRKSEIKDIVLEKKSVTVTELAKIFSVTEETIRRDLKQLESEGFLTRTYGGAFIQDGVENNIDLSIRETAYLKNKQAIASRCRELIHNGDSIFLDSSTTTLTIAKAISDMRLTVVTNSLMIINELCDKANIHLIAIGGNYTPREKAFNGLSTQACLETFYLDKTFMSCRSLSMEHGITDSLESVAAVRQSLAQRSKEVYLVADFSKFDKTSFIHITDFDAITGLVTDRKLSSQWVDFLNSHNVAVYEAQNE

>SAMN05216313_105186_UniProt_A0A1I0E126
MRMVFNFKMSLEDYHQMMVSRTFGNSWIRRIILLVVWLVFTGLIVLDLTGVIELTRIVHVCALLVAVSFPAAVITMEINVSKYKDAYLSGFKAERQIVADEEGLTFCNRSTGESGSNTWGEVTKLEELKDVFVIQLNRREAVILPKRGMGNTKKVDQFREMVKEKIPERFYPLKRSVFR

>SAMN05216313_105187_UniProt_A0A1I0E142
MVKGTTVIKNKTGLHARPASDFVQAAGKFSSSITIRRVDEEDDEANAKSIIFLLSLGLCQGEEVEITAKGDDEQEAVDALIALIDSGFGE

>SAMN05216313_105188_UniProt_A0A1I0E2A4
MVTHQGNPVSKGAAVGRVYKYVPYQAVVEQTSIRPEQAEEELAAYRAARERAGAELSAMRERLGEGDADKAAILGAHAEILADPALDEMVSGLIRDEYYNVKWAVDRAFSKFIKMLSRVKDDMIRERIADMKDVRLRLLRSCDGAGEVNLGALTEPVVVVAQDLFPSDTASLKREMVLAIVTEVGGATSHTAIIARSYEIPALLGVSDAMNLLTDGQVVGVDAIDGVLATDLSPEETAALEKKGEACRIHARETKKYQGAEPVTGDGVRIDVELNIGSASPEELEAACFTDGVGLFRSEFLYMGRDTLPGEDEQVEIYTRVLKAFEGRPVTLRTLDIGGDKKLDCLELPKEENPFLGNRALRLCFTYPEIFKTQLRAALRAAVAGDLWIMFPMVGSMDDIRRAKAALREAGEELKAEGKPFGTVRTGIMIEIPSIALIADMAVREVDFASIGTNDLCQYATAVDRMNPAVSTYYQKYHPAMFRLIRTVVETFNRAGKPICVCGELGGDELAAAVLVGLGMRKLSMGRAFVAQTKKMITGMTISRAREIACRVCDMETAAEIQEYLTSELQDIL

>SAMN05216313_105189_UniProt_A0A1I0E176
MDMFFGAVKAFFDTFSAVVFVPMIMFVINLAFKVKPKKAFISALSAGVGLQGFNLVIGAYGPIIEPIITRMVETSGVNLPVYDAGWPNTSVVAYSTQAGMVFVVIAILLQVGLFLSRYTTVFQAGDLWNNYSYFCWGSMLYVLTGNMFLAICLMTMQLLITLLITEVIAKRWSTYYGYPGCSIASLHTATVAVIAIPLNWLLNKMGLYKIQMDPNGMRKKLGIIGEPMTLGLILGILIGFVGNITRITQLAAWGEILSCGVATSAVMSVFPKISSIFSGAFTALTEASKKKTKGFKGEWYLAVNDATGYGETATLVSGLLTMPIILLLAFVLPGNTTLPMVDLVAIPYVIQPIVAMSNGNVVKSVIGSTIVCIIFLYICSACGSTFTEVVKVAGGSLGSGGAMMVTSFIIIGQPIGYLTFLIFASQNPILIALLVAVYAVSYVLIRKNKEKIYAALENQALNPGGIASAAQ

>SAMN05216313_105190_UniProt_A0A1I0E1A0
MGKKSIKLLTVCGSGIVTSSMIANKLTEMFEDEGYEVSAMEANPSEMGTYLARDKYDLVAYASPIDEDELNGTPALPAIGLITGLGEDEFLEKALEIFKAAGK

>SAMN05216313_105191_UniProt_A0A1I0E1M8
MLRKELIRLDVEAKTAEEALRIMAGLFVESGVAKPSYPDAIVAREAQYPTALPATAFDIAVPHTFAEHVNEPAMGICVLRDPVEFHQMGSPEITLHPRLLFMLAITDPKDQIKLLRKIMKLIQNPEALNQIREAGDVDEVYSIVNPQLF

>SAMN05216313_105192_UniProt_A0A1I0E0J4
MKKTIVIGCDNAAVSMKNQLKAYMEAAGYTVEDMGCDSPDDPIYYPYVAAKACQAIIDSGYTKEGVLICGTGLGMAMTANKFPGIRAGVCHDSFSGERLKLSNNGNVICFGERVIGVELAKKILGEWLTLEFKDGSSTPKVAAINELEHHNMKAGA

>SAMN05216313_105193_UniProt_A0A1I0E0I3
MKRLDRLYMGTNTKMYKTISDTTAFLSRLDQLTADIPADHLELFVIPSYTSLESASRTVAGGRIRVGAQNMGWEDEGQFTGEISPVMLQEIGVNLAMIGHSERRHVFGETDRQEEKKVAKAISSGFTALLCIGETAEDKAYGLSDETLRAQLKIGLHSITAEQAANLWIAYEPVWAIGVNGVPADEQYADERHRVIKETLSELFGPETGLDIPVLYGGSVNPENAPLLIQMPHIDGLFIGRSAWDADRFNAIIRTVLPLFGSRKNAASPQSGSCKSQKEEIR

msu.edu Reference: BMC Caller: a webtool to identify and analyze bacterial microcompartment types in sequence data
Sutter M & Kerfeld CA; Biology Direct 17, 9 (2022)
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