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BMC type: PVMlike


Organism: Clostridium sphenoides JCM 1415. Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.


   BMC-P    BMC-H/Hp    BMC-Ts/sp    BMC-Tdp    AldDh    PTAC    signature enzyme    AlcDh    regulator    others    no assignment

         SAMN02745906_1260 (fasta) HMM13382deam_1_buf1 PDU1F (HMM details)
               SAMN02745906_1261 (fasta)
                       SAMN02745906_1262 (fasta)
                                 SAMN02745906_1263 (fasta)
                                        SAMN02745906_1264 (fasta)
                                                SAMN02745906_1265 (fasta)
                                                       SAMN02745906_1266 (fasta)
                                                            SAMN02745906_1267 (fasta) HMMreg00455_1_GRM5 PVMlike (HMM details)
                                                                  SAMN02745906_1268 (fasta) HMMaldol_2_pvm1 PVMlike (HMM details)
                                                                           SAMN02745906_1269 (fasta) HMMalddh_1_eutpdugrm PVMlike (HMM details)
                                                                             SAMN02745906_1270 (fasta) H_mint PVMlike (HMM details)
                                                                              SAMN02745906_1271 (fasta) H_cyan PVMlike (HMM details)
                                                                                SAMN02745906_1272 (fasta) H_evergreen PVMlike (HMM details)
                                                                                  SAMN02745906_1273 (fasta) H_cyan PVMlike (HMM details)
                                                                                      SAMN02745906_1274 (fasta) HMMptac_3_eut2 PVMlike (HMM details)
                                                                                       SAMN02745906_1275 (fasta) P_ocean PVMlike (HMM details)
                                                                                              SAMN02745906_1276 (fasta)
                                                                                                       SAMN02745906_1277 (fasta)
                                                                                                            SAMN02745906_1278 (fasta)
                                                                                                                 SAMN02745906_1279 (fasta)
                                                                                                                         SAMN02745906_1280 (fasta) HMM00465alcdh_3_mix PVMlike (HMM details)
                                                                                                                                SAMN02745906_1281 (fasta)
                                                                                                                                    SAMN02745906_1282 (fasta)
                                                                                                                                                 SAMN02745906_1283 (fasta)
                                                                                                                                                          SAMN02745906_1284 (fasta)
                                                                                                                                                                SAMN02745906_1285 (fasta)

BMC shell protein types:

BMC-H(map on tree)

       H_evergreen
      2x H_cyan
       H_mint

BMC-P(map on tree)

       P_ocean

(complete list of loci)

Protein sequences:

>SAMN02745906_1260_UniProt_A0A1I0GI71
MVLYSKHIILENQEFDGFLEMEHGKIKALHKDYTGQYEDFSDFVILPGFIDIHIHGWATGSFWFEKSADALKEMCRTLPYAGVTSYLATTGADTIPEIERCIKAADDACEADYPGAEMLGVHLEGPFINPLYRGMQREECCILPSLKVMEDIYNSFRNKELCRYMTIAVEQDGAREVLEFCKEKGIQTSVGHSGATFSQIKEIKDAGIGGFTHTFSGMRGFHHRELGVAGAALYFDDMMCEFAKQTGMTVSHEAFDIAFRIKGSKRIIMTTDCSGLAQTRTEFDHYVRKMKFIKEGDKVRISHYDGREEWMDPKDYQAVRELELGYIGSIQNMARHTSVDWFDIMRMTSLNPARYIHADDRKGSIEPGKDADLTIVDSNLNLVSVFCRGKEIRE

>SAMN02745906_1261_UniProt_A0A1I0GI80
MKCAVSDFDRTLYIDGCISAKNLNAVGDWQAAGNRFVIATGRNESSVRVFLEKYSIKPDALILNNGALLLDETGKELFCRTIDDQTAREVLWYLHGLGEEGSGVSMRNGKVNVLSSSGATTQKPCDGQVSIDQIHSLKEIIQIHRRRQDLQWIRTLCARLNERFPLISAYANVWNGDIVAKGVNKSAAVKWISRYWGGFDEIRTIGDSFNDLQMINDYGGATLRSGDPEVQATASLIVEDVAEYLSMP

>SAMN02745906_1262_UniProt_A0A1I0GKC2
MKKRLAMVLAAAMVLSTTACGSSGTAATAAPASTEAKTEAAKTEPATTAEKVENAQSTGSLAGKKIAVVRNLAAGDHTQQFLDGCVSEGKKFGWTVDTFVTDGDDAKAQETVAQVIAKDYQGIIVSHGQLSYSYDMLKPARDKGMEVVTFDTMPFKGGDASGELLSGVTSTAQNDQALAELSLGYMMKEFEAKGGKYPMKVLKTFMGPGIPPLDRRNEIYTKLEAEGKIQTLEVIAPSDSANARGDMTNKTAAILPKYPEGSVDAIWGCYDELAKGVLQALNDAGRTDIPMYTIDVSNDDIQLMVKNPDVWKSTAAVDPKLIGIVDARLLALKFMGEETPDYFNLNACNIETTQLGVQTTMSDLSSIIDGWGDAEDPKGALYTDTIKNKYVN

>SAMN02745906_1263_UniProt_A0A1I0GI99
MTEVKLEMKDISIEFPGVKALDGVDFGLKSGTIHALVGANGAGKSTLMKVLAGVNTHYTGQIYVGGEPVEIRCPKDAKNLGIEIVFQEVDTALIPYLSVAENVMFNTLVNKMGRKQIVHWKEIRQAAETVLKKLNVDVDINKKVSGLTLAQKQMVLIARCVAEKCRFLILDEPTAPLSNSETLELFRVVRELAKENVGVVFISHRLSELYEICENITIMRDGKLVTELPLSRELEVNTLVEYMLGRSYEDNYIKKKCEIGGPLLEIENLSEREGKVKDINMTVCKGEIIGVAGLVGAGKTELCKTLFSAYQQSGGTMKLNGKVIKAKGPTQAVKHGLALVPEERRKEGVLISDPVVSNISVAAMEKYTNRLSVVNKKREKVDAKNMIRDLGIKTPSENQVVALLSGGNQQKVVVGKWLNKDSEVYIFDEPTKGIDVGAKQDMYELIEGLAARGKGIIYATCEFQEILSICDRIYVMYDGEIIKELNAADTNEKELLYYSTGGK

>SAMN02745906_1264_UniProt_A0A1I0GHY7
MSGAEKVKKKRNVGDFVTKWGTIATMLIMFILFTFGNWSKDTGASMFLTQSNMITILRAVSITTIIAIGLTFALAVNGMDLSIGATAQFANVFVMTCFVWHNINIGVSIILTVLICLSVAVINSILIVKFKIPDMVAALSVMFMYQGVSMTYSKGGAITERMTRADGTQAPGLVPEAFRALGKEPWLIIIMICVVLFAYFFLNYTKHGRYMYAVGGNPEAAQLSGIPVAKYKILAYFLSAVFASIGGICLAARVGTAQISAGDSYLMPSVCAAYIGFSVLGAGKANAFGTFAGAVLVGMLENGLIMMSVPYYAMNIIKGAVLAIALAMTYASGKTKNVN

>SAMN02745906_1265_UniProt_A0A1I0GKR2
MSKYDSYFLMKAEEVPDYVKEKLTYFDADARLECKEIGDGNLNYVFRVKDPASGKTIIVKQAGEALRISAEMHVSTDRGRIEAKILGIQDSYAPGLVPKVYLYDGTMCAMVMEDMIGHTMMRTGLLKHETYPKFADHVTTFMVNSLLRTTDVVLGHKEKKELVKSFINPDLCEISEDLVYSEPFIDYNHRNNVFPPNAEFVKKELYEDQALHLEAAKLKFEFMNNAQSLIHGDLHTGSVFINKEHTYIFDPEFAFFGPMGYDIGNVIANMFFAWCNGDATIEDEKEKEEFCGWCLSTISDIVDLFIEKYNKVFDEHVTETMAKVPGFKEWYLEGILSDTAGVAGLESIRRTVGMANVIDITTIPDEEKRARAEKIVITLAKNYIMNRRSFQSGADYLNAIKEAIGKFESR

>SAMN02745906_1266_UniProt_A0A1I0GIC5
MSEETKKSIMDYDTVALDEENNALVIIDQTQLPYHTEILSLTKQEDIWNAIYLLQVRGAPAIGVAAAIGIYLAAREIKADGFEDFYTEFQKAKDYLDSARPTAVNLSWALKRMEQVVLKNKEKTVPEIVEILHKEAIEIREEDIWVCKMIGEYGLSLVKPGDGLLTHCNAGQLATVKYGTATAPMYLGHEKGYNFRIFSDETRPLLQGARLTSFELKESGLDVTVICDNMSATVMRNGWVDAVFVGCDRVAANGDTANKIGTSMVALAAKRYGVPMYICAPTSTIDMNTLTGKEIHIEERPAEEVVEMWYKKRMAPEGVKVFNPAFDVTDNDLIAGIVTEYGIARAPYTESLKEIFRRKEEALKAKEM

>SAMN02745906_1267_UniProt_A0A1I0GHQ1
MLAVTRKAKIKDIILEKKSVTVTELSKIFSVTEETIRRDLKQLEDDGFLTRTYGGAFIQDGVENNVELTIRETAYMESKQAIAKKCLSVIHNGDSIFLDASTTSLQLAKALQGMRLTVVTNSLLIINELYDKEDIRLISIGGSYTPRDKAFVGNTAIRNLESFYLDKTFMSCRSVSMEHGITDSNEAIAAIRQTLMTRSNHVYLIADHSKFDKTSFIRISGFEAIKGLVTDKQMNEQWREYLLKNNVELLEAVEA

>SAMN02745906_1268_UniProt_A0A1I0GI38
MMTVQGVKYMSDFEAKKAILDIGRRMYEKGFVASNDGNISCKVGPNTIWTTPTGVSKGFMTQDMLVKMDLNGKVLMGRWKPSSEVKMHLRVYKENPDVQAVTHAHPLVATSFAIAGISLDAAILTEAVLGLGSIPVAKYATPGTEEVPDSIAPFVKSHNGVLLANHGALTWGKDIHQAFYRLESIEYYATILMYTGNIIGRQNLLSCDQVEKLLDIRHKLGITAGGIPPCSVEVTNMKDVVTAADVRPAEQTGTGPVPVLKGVTSIVRPGESLPVGCGCTGVTQKTLTLEEQKPVEAEALGKAKKEIIAEVVRRVIEQLN

>SAMN02745906_1269_UniProt_A0A1I0GIH2
MEIGAKEIELIVKEVLAGIENRGVKPSYFSSQSENGVFERVEDAITAAHTAQREWVEHYRIEDRRRIIEAIRMTAKSHAKTLAKMVWEETGMGRFEDKIQKHMAVIEKTPGVECLTTDAISGDEGLMIEECAPFGVIGAITPSTNPTETLINNTISMIAGGNSVVFNVHPGAKRCCAHCLKLLHQTIVENGGPANLITMQKEPTMEAVSKMTADPRIRLMVGTGGMPMVNALLRSGKKTIGAGAGNPPVIVDDTADIDLAAKEIYRGASFDNNILCLAEKEVFVMERVADELVNKMEKEGAYLLNSRELNEILKFAMIEKDGSYEVNKKWVGKDAALFLEAIGVSGHKDVRLLICETDRSHPFVMVEQLMPILPIVRLRTFEECVECAVAAESGNRHTASMFSRNVENMTKFGKIIETTIFTKNGSTLKGVGIGGEGHTTMTIAGPTGEGLTCARSFTRRRRCMLAEGGLRII

>SAMN02745906_1270_UniProt_A0A1I0GHS7
MAIGFLECAGYGAVLYAMDKACKAANVRIIGIDTINPKDATAFIPLTVQVKFEGGIDDVKEACEAAKRAALKFNSPEEVLVEMIEKPYEGTKALSHITKVSFEEENIINFRR

>SAMN02745906_1271_UniProt_A0A1I0GIJ3
MASTSIGLVETRGLTASIEAADAMLKAADVELVGTEKIGSGLVTVIVTGEVGAVKAATEAGEAAASRVGELVAVHVIPRPHQDIDKILPRIK

>SAMN02745906_1272_UniProt_A0A1I0GHV5
MKTNRNAIGVLEINYYANTVVVVDQALKAAEVEIVSCHKKLGGRMCHTVLAGETSAVRAAVEAAREAGRIVGDDNVKVSVSIENPHPEVLKLLNMIDRHENEKNSVKPEEEEHKIKEEK

>SAMN02745906_1273_UniProt_A0A1I0GKP7
MAETAVKKGMLALGMIETRGLTASIEAADAMLKAADVEMVGTEKIGSGLVSVMVQGDVGAVKAAVEAGEEAASRVGEVVAVHVIPRPHNSIGGILPFLK

>SAMN02745906_1274_UniProt_A0A1I0GIL2
MENREELIQKVTALVLDNWKRLSAQPYQVPVGISARHVHLSKEHVEALFGVGYRLTPMKALSQPGQFACEEQVAVSGPAGTLPKVRILGPERKQSQVEMASGDCRILGIQPQVRSSGDLKGTPGIMLKGPKGEVLLTEGVIIADRHIHMTPEDAQWFGVSDQDRVSVSVDGPKGGVLGHVLIRVTRDSRLDFHVDTDDANAFQLKQGQWVTIRKEEAR

>SAMN02745906_1275_UniProt_A0A1I0GKS0
MILGTIMGTVVSTRKCRNLVGFKLLLVEPYYGDQKDIFVAADTIGAGIGELVLVTTDNTTQYALDRSAPVDAYIVGIVDAPPQPGR

>SAMN02745906_1276_UniProt_A0A1I0GIK9
MEQETLKILAVADPAVEGYLDKELGIIDGYGGNVDFHIVPWADYYPMMMKAFAGEADYDIVMVAGHLWLRDFVENGYLSELALEEEDILPVIAEEMKYKGKAYLSPSFCDGHMIVYRKSLLEQVLGKELGSVITPQEYIETAKAYKAACGEQAVAMKADKSEIFTDALPFLRMYGGDAYDPDGSAACGKEDAVKGLQSYVELRACAVGGTDSFGNGEIAEAIRQKRAAMAVTWSGQMGEVFKEGCMDPEDLGFSTFSTAWNVTWSFGICSSCRKKEAAEEFLSYLRSPEVDQKVGRMSGAPVRRGSYLEGAGDCPWFPVQLKMMELARPLPDLSKAGEKNGVLYEKIFEAFSGKKTAEEAMREAGKMMSGITEL

>SAMN02745906_1277_UniProt_A0A1I0GIP1
MKIIIIGGVAAGMSAASKIRRVDPDAKVTVYEKGGFLSYGACGLPYYVGDYNDDYRKMIARSRETFTKMGIETFLRHEVQSVDVDRKEVLVKNLENGQEFTDSYDKLMIAVGASAVVPPFPGRELMGVHVLKSMEDGIFLKEYAKMPEIRNIVIVGGGYIGVECVEAFLNLGKNVRMLEAAPRILMPFDEEIAALAHEELVKSGVLLNTGEKVEGFYGDGLYVKGVKTDKGTYDADLVIVAVGVRPCTEFLKNTGISMGKNGGLIVDREMRTSIPDVYAAGDCILVYNEVLEEDSFLALGTVANKCGRIAGANLAGGHESFIGALGSAAIKVCGLELGRTGMGEGDAIRLSKDYKTLIIQANDHPAYYPDPTPITIKLIYEKGTKRLLGAQTCGQKGAVLRADVFAVAIHCRMTTAELGMTDLIYAPPFSGVWDAIQIACNAAK

>SAMN02745906_1278_UniProt_A0A1I0GIN1
MSKIMTLQEAAARIHDGDILGLGGNVLHRAPMAMVRELVRQKRRDLKLVKTAGAMDVDVLCFGGCVTSVDAGFISYESEYSLAGHYRRAVESGAVKGNEHACYTVISALRAASYGVGFMPVKGLVISDLIDANDYFIRVEDPFTKEPVTVVKAIRPDVAVIHVQEADEDGNARITGPLFEDVLFSRAAKRVILTAENIVHGSAFTGSSKKADIPHFLVEAVVRVPKGAAPCSCPGSYDIDGKNLKEFKGLKDLDGLNAYLKAFEKSDYKG

>SAMN02745906_1279_UniProt_A0A1I0GIG1
MMEEKYRVSDIMVCAMARLIPDGSKVFHGVSSHMPMIALLLAKALHAPGAVHLNIPGGTDPDPVRLKKYTSAGPELLERATAYFPLMEVFDLAMRGELDVAFLSGIQFDSHGNVNASVIGDYKKPKVRMPGGAGSAVLIPTAKRAILWRTKHDKRTFVNQVDFVTTRGNVERIITPLCIFKMENREMVLDTIHPTSSLEEVQENTGFPIKYSHIAYTPLPTKEELSALKRIDPGDFRNIEF

>SAMN02745906_1280_UniProt_A0A1I0GL85
MALERINAVGTSFFGRGSIGLLPDELKKRGFKRALIVTDPFLYKNGTGDKVGACLLKAGVEYAIYYLVEPNPTTMVVGDCLEAAKALEVDLLVAVGGGSAIDTAKAVSIVMANGGKVEDYEGVERSLNPGMPIVAVNTTAGTGSEVTSFYIVTDPVRHSKMCMVDPNCMVTIAVNDVDFMMSMPKALTASTGMDAMTHAIEAAVAKRATPYTDKDALWAMGVIGTYLPEAVADGSNEKAREMMAYAEYSAGMAFSNAGLGMVHAMAHSLGGLMNLPHGICNAVLLPFVMEFNGSRPEAAERYKKVAEGLKLPGASAMTGEQAVKETVACIRRLSREVGITQSLKELKVNPEDFKALAEIALKDTCMEDNPFKPTLGQVIEVYRNAYG

>SAMN02745906_1281_UniProt_A0A1I0GKZ4
MKKLINVPENYVNEMLEGIYLAHPDYVTYTEGDLRCLVTSNKVEGKVGIATGGGSGHLPLFLGYVGKGMLDGCSVGDVFQSPSAEQMLNVTKRIDSGAGVLYIYGNYNGDIFNFDMAAEMADMEEDIHVESVVAGEDVASPKAAPGEKNTRRGVAGIFFVYKCAGAAAAAGKDLQEVKRIAEKAAANVRTMGVALTPCTVPRVGHPGFKIGEDEMEIGMGIHGESGIRRGKLETADEITLEMMEKILEDIPYCAGDEVAVLVNGLGATPLDEQYIVARKVNMILEEKGIKVHRYYVGEYVTSIEMAGLSISLLKMDEELRGYLDAPADTPFFKQGIV

>SAMN02745906_1282_UniProt_A0A1I0GL07
MNQQELIAMLGRISKIMVENRNYLIELDSVVGDSDLGLTMTDGFQAAYDAVSDGSEPDLGKLLYKAGKTMGNKVPSTMGTLMAAGLMRAGKTLKGKTELTGADAVSLFEAYEAGVADLGKAKLGDKTFLDGFHPGVQVLKAEVEAGVSLEEAFGKAAAAAWNGFEQTTTMIAVHGRAATRGEASRSLKDPGAAVAALIMKAVADR

>SAMN02745906_1283_UniProt_A0A1I0GL27
MNYNQIAKDIITNVGGSDNIRGLTHCFTRLRFELRDTKKAKKEVIEHLEGVISVVESGGQFQVVLGTKVTKVYEAILPMISLEENTADSEEKGSVWNRILIAISSMFTPMVPAIAASGLLKGLLTIARITASNHGLDITVNQTYILIMAATDALFYFMPIILAYTSAKVFKANEFIAMALGGTMCYPAVVSLMTGSEAVSMFGIAITKASYASSVIPIIIGVFILAYIQKFLEKIIPEVLKIILVPGISLLVMIPATFMVFGPIGIYIGNGINFIYTGMMNLSPALCGAFVGGMWCVFVIFGAHRALLPIGINDVAQFGHQNLLAFAGAANFSQGGAALGVMLKTKSKDLKTVAASAAISASVCGITEPAIYGCNLRLKKPMIYAIICGAIGGAIMGVGGVYGDSFANNGVLTFATYAAFGMKTFIYYLIGVAVSFFGAMGLTFLFGFDDISGKGERASGSDEGAAESQDVLGITSGADILISSPVEGTAVPMTSVNDEVFSSMALGNGVAIVPEKGEVVAPEDCTVTLVYPTLHALGLMLDSGAEMIIHVGINTVQLEGKHFKKHVEEGTHVTKGTRLLSFDLDALKKEGYDTVVPIIISNTAAFHEVTGITGSGASLQKPVIAIKNNQ

>SAMN02745906_1284_UniProt_A0A1I0GJ03
MEITKTNFPKNFLWGASSSAFQIEGGWDEGGKGITVADVNSFKRSDIQADSKVASDFYHHWEEDIRLMKELGMQIYRFSISWARIIPDGDGEINQAGIDFYHKIIDRLLEQGIQPFITLYHFDLPYALARKYNGWESRECVKAFERYAKICFKAFGDRVTYWQVHNEQNLMVRVNERMNITTDDAWEADRQRAQMDYHMFLAHALAVKACHSIIPDGKIGPAVSSTCTYPESNKPEDVWAARMNDWFKTDYCLDMHYYGRYPGYYMRYLEERNIVPVMEPEDEEILKGGAMDFIALNYYRTLCVRYLPTDEGHLAGERAFPINEVDFDQYGYFHHIKNEHLVSSEYGAQIDPLGLRTVLNSYYQKYHLPLIITENGLGAADTLTEDGKVHDEYRISYLKAHIKAISQAIEDGVSVMGYSPWSFMDLLSSHEGFRKRYGFIYVNRDDHDLKDMSRVKKDSYFWYKRVIETNGDEL

>SAMN02745906_1285_UniProt_A0A1I0GIZ8
MRVVKVMNNSLLLALDDSGREVILMGKGIGFNKSIGHHLKSEDIEKVFVLKDRSISKNIIRLASEIDSTYFELAKQVIDYAIDTYGMVLMEHIYLGLTDHLSFAVKRNNEGILIQNFYTQTLKRFNPKEFKVGLYALQLVRERLSVELPEDEAGNIAFHFINAQTNNLNSMDNQKIFETVKGILDIVKYNFSILYDEDGIGYTRFVTHLRLFAQRLVNGSQDLYDYEDSFYTHVLESCPSEYECVKKIGVFIREKFESKLSKQEEMYLAVHIHRILEEYAQREKT

msu.edu Reference: BMC Caller: a webtool to identify and analyze bacterial microcompartment types in sequence data
Sutter M & Kerfeld CA; Biology Direct 17, 9 (2022)
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