Home BMC loci Shell proteins Help Locus database News Citations Contact

BMC type: PVMlike


Organism: Clostridium clostridioforme 90A8. Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.


   BMC-P    BMC-H/Hp    BMC-Ts/sp    BMC-Tdp    AldDh    PTAC    signature enzyme    AlcDh    regulator    others    no assignment

      HMPREF1090_01621 (fasta)
            HMPREF1090_01622 (fasta)
              HMPREF1090_01623 (fasta)
               HMPREF1090_01624 (fasta)
                HMPREF1090_01625 (fasta)
                 HMPREF1090_01626 (fasta)
                     HMPREF1090_01627 (fasta)
                                       HMPREF1090_01628 (fasta)
                                              HMPREF1090_01629 (fasta)
                                                        HMPREF1090_01630 (fasta) HMM00465alcdh_3_mix PVMlike (HMM details)
                                                          HMPREF1090_01631 (fasta) P_ocean PVMlike (HMM details)
                                                               HMPREF1090_01632 (fasta) HMMptac_3_eut2 PVMlike (HMM details)
                                                                 HMPREF1090_01633 (fasta) H_cyan PVMlike (HMM details)
                                                                   HMPREF1090_01634 (fasta) H_evergreen PVMlike (HMM details)
                                                                     HMPREF1090_01635 (fasta) H_cyan PVMlike (HMM details)
                                                                       HMPREF1090_01636 (fasta) H_mint PVMlike (HMM details)
                                                                                   HMPREF1090_01637 (fasta) HMMalddh_1_eutpdugrm PVMlike (HMM details)
                                                                                          HMPREF1090_01638 (fasta) HMMaldol_2_pvm1 PVMlike (HMM details)
                                                                                                HMPREF1090_01639 (fasta) HMMreg08220_3_GRM2 PVMlike (HMM details)
                                                                                                     HMPREF1090_01640 (fasta) HMMaldol_3_grm5 PVMlike (HMM details)
                                                                                                                  HMPREF1090_01641 (fasta)
                                                                                                                         HMPREF1090_01642 (fasta)
                                                                                                                                 HMPREF1090_01643 (fasta)
                                                                                                                                              HMPREF1090_01644 (fasta)
                                                                                                                                                        HMPREF1090_01645 (fasta) HMMreg00356_1_pdu1d GRM5 (HMM details)
                                                                                                                                                              HMPREF1090_01646 (fasta)

BMC shell protein types:

BMC-H(map on tree)

       H_evergreen
      2x H_cyan
       H_mint

BMC-P(map on tree)

       P_ocean

(complete list of loci)

Protein sequences:

>HMPREF1090_01621_UniProt_A0A0E2HRK0
MDYRMLGDILPAVEVRLQAGEAMYTQSGGMAWMSDGFTLDSNVKGGLMKGLGRMFSGESLFMATYTASRPDSVIAFASTVPGKILAIDTAKTSLICQKGAFLCAQTTVEINTVLTKKFTAGFFGGEGFILQQIQGSGMAFLEVDGDVVERVLAPGEVIKVDTGNVFAFEPSVSYEIETMKGVKNILFGGEGLFLTKLTGPGKVYMQTMNIAEFTGRIAQGLPTSK

>HMPREF1090_01622_UniProt_A0A0E2HD76
MFDGGNAQAKTVQAVGPHGVFETWRKECMEYRKNLFVRLLMDASLACVLRNGYPPMYGNTEQYHTKESIKRRIEAMEDEREMESWTDINRLNDALKGRLLAALWQKALKLCDIDYTPVPAAYTQGFQLAADGQRWWCQFADGSYAAKGWYWLRKAADGTCGWYLFDAEGCMLTGYQTDAAGDVFLLCPGIFSHKY

>HMPREF1090_01623_UniProt_A0A0E2HDC9
MNETNACSMQHVHEILGSTLIAERCDDPHNHRFATVSGEAIPYMGSHVHRVTFLTDSYDGHFHEFSGTSSPAIPVGDGRHIHFAKARTTFQDGHTHEFRVSSLINNPIDRC

>HMPREF1090_01624_UniProt_A0A0E2HCM3
MPKETVKILKALYEEREIVSFDHLRLHGYLCVQSEPNRKWAVLVHEYDDSGLWFGREALAFYQA

>HMPREF1090_01625_UniProt_A0A0E2HDV9
MKKTMTATAAGTAAGIAGLLAENIFFILPWMRQRINQPR

>HMPREF1090_01626_UniProt_A0A0E2HRK4
MSNNSNRTNVPEAKEAMDRFKMEVANEIGVPLTNGYNGNLTSAQNGSVGGYMVKKMIEAQERQMAGK

>HMPREF1090_01627_UniProt_A0A0E2HD81
MNETLNTILTRRSTRKFSDKPIPEDEMELIVQAALHAPSGMGFQTWQFTVVRNREKIQMLAAAIEKTLDRQGYDMYQPRVLVIPSNEKESRFGREDDACAMENIFLAAHSLGIGSVWINQLQGICDEPAIRQILTSFGVPSGHVVYGMAALGYAADTKADKARTGKVVYVD

>HMPREF1090_01628_UniProt_A0A0E2HDD3
MLNRQPVNSLKGIGEKTGKLFEKLGVVTIDDLLAYYPRAYDAYEAPVPIGQLKEQTIMAVESALVRGADLVRLGHMQIVSVQLKDLTGSLQVSWYNMPYMRANLKTGVKYVFRGRVVRKRGRMVMEQPEVFTPENYEVLAGSMQPVYGQTRGLSNKTIVRAQQMALEVRKMEREYMPPDLRRRYELAEINYAMEHIHFPADQTELLFARKRLVFDEFFMFLVGVRRLKEHREDRHSAFMIKEAEEVTAFQSSLPYALTGAQERALREVYDDMGSGLVMNRLIQGDVGSGKTIIAILALLQAAYNGYQGALMVPTEVLARQHFESITSLFEKQGIEKVPVLVTGSMTAKEKRLAYAKIASHEADIIIGTHALIQEKVVYDNLALVITDEQHRFGVGQRELLSSKGQEPHVLVMSATPIPRTLAIILYGDLDISVIDELPAGRQTIKNCVVDPGYRPKAYTFIERQVAEGHQAYVICPMVEESEMIEAENVLDYTKALKKALPPSVIVEYLHGKMKGKEKNALMERFAAGEIHVLVSTTVIEVGVNVPNATVMMIENAERFGLAQLHQLRGRVGRGKDQSYCIMVNCSRDEGAGERLDILNRSNDGFYIASEDLKLRGPGDIFGLRQSGDMEFKLADIFTDANILKKVSEEVNRLLDADPGLEKDEHRELKRKVEEYLGTNYEKLNL

>HMPREF1090_01629_UniProt_A0A0E2HCN0
MLIGALEAGGTKMVCAVGKEDGTILEQVSIPTTTPEETIPKLIEYFQDKEIEALGVAAFGPVDVKPESETYGYILDTPKLAWRHKDFLGRLKDELKVPMGLDTDVNGSCLGEVTYGCAKGLDSVIYITIGTGVGVGVCINGTLLHGMLHPEGGHILLTRHEDDPTGGICPYHKNCLEGFASGPSIEARWSKKAVELVDRPEVWEMESYYIAQALVDYIVLLSPQKIILGGGVMHQEQLFPMIRQKVKEMLNGYIKTKELEDMDSYIVPASLHDDQGIMGCIKLGLNALRA

>HMPREF1090_01630_UniProt_A0A0E2HDW5
MEKIHAVKTSLFGKGSIALLPDELKKRGLTRGLIVTDSFLYKSGAADRVGACLLMAGLEYAVYYLVQPNPTVQVVEECLKAADALEVDVLVAVGGGSAIDTAKAVSIVLANGGHVKDYEGVGKSGKPGIPIVAVNTTAGTGSEVTSFYIVTNSDTHSKMCMVDTNCMVTIAVDDTDFMMTMPKGLTASTGMDAMTHAVEAAVAKRATPYTDKDALWAIRTIKEYLPAAVSNGSDVKAREMMAYAQYSAGMAFSNVGLGIIHAMAHALGGRFGLPHGLCNAILLPCGMEFNGSDKMASQAFKKVAAALDLPGMDLMTGFQASQASAVYLREFSASLGLPQRLRDMEVNPEAFGELAETAMEDSCMDDNPFRPTKEQVEDVYRRAY

>HMPREF1090_01631_UniProt_A0A0E2HRL0
MILGTIKGNVVSTRKCSSLVGFKLLLVEPFYGEKRNIIVAADTIGAGIGELVLVTTDNTTQYALDRSAPVDAFVIGIVDSPPQAEL

>HMPREF1090_01632_UniProt_A0A0E2HD86
MERKDDENREIMIQAISSLVYEQWERLSRDPYLVPVGISARHVHLSREHVDQLFGQGYLLTPMKYLSQNGQFACLEQVAVQGPKGGFQKVRILGPERAKSQVEMSASDCRFLGIEPVVRTSGEIDNTPGIRLKGPSGEVSLKQGVMVADRHIHMTQADAAWFGVSDRDRVNVRVPGPKGGILSHVVIRVSTDSRLDFHIDTDDANAFQLKQGQWLPVRKEMFE

>HMPREF1090_01633_UniProt_A0A0E2HDD9
MAETGMASKKGMLALGMIETRGLTASIEAADAMLKAADVELVGTEKIGSGLVTVMVQGDVGAVKAAVEAGQDAACRIGELVAVHVIPRPHTSVGAVLPFIR

>HMPREF1090_01634_UniProt_A0A0E2HCN4
MGKIGNAIGVLEISYYSNTVVVVDRALKAADVDIVSFHKKLGGKLCHAVLAGGTSAVEAAIEAAVQAAETVGSDAIKVAAVINAPHPEIMKLLNMIE

>HMPREF1090_01635_UniProt_A0A0E2HDX0
MASTSIGLIETRGLTASIEAADAMLKAADVELMGTEKIGSGLVTVIVTGEVGAVKAATEAGQEAASRIGELVAVHVIPRPHQDITRILPRLK

>HMPREF1090_01636_UniProt_A0A0E2HRL6
MALGFLECAGYGTALYAMDHACKAADIRIVGIDTINSKDSSAIIPLTVQVKFEGSVDDVRIGCIAARDAALMFNDPKDVLAELIEGPYGGTNLLSLITKVP

>HMPREF1090_01637_UniProt_A0A0E2HD93
MEISEKEVEAIVRSVLSGLGQKSFQAEALHVKDKMCSDGEDGIFELVEDAIEAASKAQKEWVHRYKLKDRKRIIEAIRVTSRAHAESLARMVHEETGMGRYEDKITKHMAVIDKTPGVECLVTDAISGDEGLMIEEPAPFGVIGAITPSTNPTETMINNTISMIAGGNAVVFNVHPGAKKCCAYCLQILHRAIVENGGPKNLITMQREPDMDAVHKLTSSPHIRLMVGTGGMGMVHALLCSGKRTIGAGAGNPPVVVDDTADLSLAARELYRGASFDNNLLCLAEKEVFVMDNVAEELVDRLVGEGAYLLDDLQLKKITELAMVNKDGKYEVNKKWVGKDAGKFLEAIGIQEHREPRLLICVTDRSHPFVKVEQLMPVLPIVRCGSFEKCVEWAVDTEAGNRHTASIFSKNVEHMTLFGKEIETTIYTKNGATLKGIGIGGEGHTTMTIAGPTGEGLTCARSFTRRRRCMLAEGGLRII

>HMPREF1090_01638_UniProt_A0A0E2HDE4
MMIQGVKHMTDFEAKKAILDIGKRMYDKGFVASNDGNISCKVGTNAIWTTPTGVSKGFMTQDMLVKMDLSGKILLGKCKPSSEVKMHLRVYRENPEVQAVTHAHPPVATSFAIAGIPLDKAVLTEAVMGLGTIPVARYATPGTEEVPDSIASFVNTHNGVLLANHGALTWGKDVYQAFYRLESVEYYATILMYTGYIIERQNTLSSSQVERLLEIRRKLGITTGGIPSCTDVNQTDVQQQRKNSTELAESLNLKGVTRLMRPGDIPQGQEEMPSAQDKSKEEIIREVVRRVLEQLK

>HMPREF1090_01639_UniProt_A0A0E2HCP0
MNRTERLAEIKKVVEESGRIEVNDLSDMFHVSEVTIRKDLSLLEDRQCIRRIHGAALPKGEISDAEPIREDSLGMHIEYDRKKEEIGKIAASLVTDTGWVFIGQGTTCYYIARELAKMEEVNVLTNNLLAAQALARNKQANVIVTGGNLVHSHLYVAGEMFMRNLDKVYISKAFMGVGGADLSAGYTVNYSTELIVYQTIKAIADQLIIVLDSSKFNRTTFLSLGSLTFSDVIISDKGIPAFYREFYETNGVKVLT

>HMPREF1090_01640_UniProt_A0A0E2HDX5
MLYEEARQEILDVCRRMVRKGYFLGTWGNVSVRIGDHIVLTPSKVEYGSMRLEDFVVIDLEGNKVEGSRTPTSEKEVHRQIYLVRDDIKAVIHAHTQKAMAVSALPISSVPCMVEEMSQLFGGKIPLSRQYIPAEQHQSLGRGAAEVIEDKNGLILRNHGPVACGRNLSEAALTVDVMEKACAIYLDIINRPIKEIPSRFVQSERERFLFKYGHENT

>HMPREF1090_01641_UniProt_A0A0E2HRP3
MERYIIGIDSGTTGIKAVLFDEQGNEIAKKGIGLKGYFPQENQYEEDMEEIWEKAQICVKSVAAQVDRNAIIGIGITAQGDGLWMADEDMNPVRRGCCFCDGRAAEFVDQWVEDGTCERLFELTGTWVFTGNQNGIVRWMEKYEKESLEKSRWLLHLKDYLFYKFTGQVTTDATDQSLIFLDQTRRDYLEEAFEVCGLKEYREKYPPVKTAKENAYFILPELAEKAGLTDKVLVTSGPMDVGACALGSGVIDNAHCCSIIGTAALHEMVIDKPLQDKIKSGMTVSHVMEGKWLRLMASLAGTPNLEWMLQTIGSQIKEEAEKLGKNVYDYMEEMINDVPIGAHGVMYHPYLLAGGERAPFTDSRARASYTGLSVKTSLADIVRATYEGVAFAMLDCYEHMPLTPKQITVCGGGSGSNTWCQMFADALGSRIVTVKGDELGARGAAINNMVVQGIYGSYQEAVSKIVKTKMVYEPNMEHHKKYMKFYELYKEIYMSIQKSWKTRAAILKE

>HMPREF1090_01642_UniProt_A0A0E2HDC1
MKFGICYCYWSKDWEGNDYPKMIERARACGFDALEIFWGRTLTMEQQEVNEILAASKANDVEIYVSGGFGKEEDLSQADETGRRAAVEKSKRLIEAIARLGSHNFSGINYGAWCKFDRPIDKEKSFEQSAKSLKEIGRCAADYNVSWNMEVVNRFENYMLNTAAEARKLADMVNHPNINILLDIFHGMIEEDDLAEAIRTAGSRLGHYHMGSNNRRPPKPGFLPWQQVVDALKEIKYDRCISFEPLVRTGGSVALEGGNVWRNMLPADADDKYLDDLIKESLGYIKGMF

>HMPREF1090_01643_UniProt_A0A0E2HDH3
MKDKILGMVKSTAGAVLIVTILMTVIVQLLTGHFYTAYNLSTFSRSASFTIIIGFAQTLVLLLGGIDLSVASVAGLCSMIFAMLTTVGRVNPFLSIMIALMAGVALGAINGIFICSLNLTPFIVTLATSALYKGIIYVATKGIPLTGIPESVTIIGQGTLFGIIPYPAIIMVILAVILIYMLRYTSFGRHIYAVGGNEHAAKIVGIQINKTKMAVYALTGFISALAGILMVLRLGSSQVNIGENWAMPSITAGVLGGTSMNGGSGGIGGTIVGGLLMSVISFSISLLGISSYWDQIVTGVVVLIAVAIDAIRRRNNSNV

>HMPREF1090_01644_UniProt_A0A0E2HCT0
MAEYLLEMKQIVKQFPGTLALDHVDFTLEQGEVMALIGENGAGKSTLMNILMGMLQPDSGEMVLRGETITNRSPYEALQKGIGMVPQELNLVSDLSIAENIFLGLHQKRGNRINWDQMRSKAKEMLDKLEVDIDPGKKISEVSAAYQQLVSIARTLVFGSNIIILDEPTASLTLNETEHLFKNIWKLKNEGKAIIMITHHLDEVLEIADRVTIMRDGKLIKISNASDLSIDDMIYYMANQKVEKSRHIVRPVSDEVFLKVIGLCRGREFQNVDFEVKKGEIFGVAGLVGAGRTELFSCLYGLTKKEKGKVYLEGKEVEITSPDEAISYGIGLVPEERRKQGMFPILSIYENIMMPNYHKITRMGRINFSQARDAANRHIQALRIKTPDCLTQIKNLSGGNQQKVILGRWMEKQVKLFILDEPTRGIDVRAKGEIYKLIRDMADSGITIIVISSEIEELLTLADRIMIMNGGKVKGVVVPNEDMEREDILKVALH

>HMPREF1090_01645_UniProt_A0A0E2HE04
MKKRTIAVVLAAVIAMSSLAGCSGGGKPADATTAATETTTVAATEQKEESTKASESKETEVKAEEAVSSDLILGDYEPKKKEYNFYLTYKLVHAWWDAVGLGLEEAQKQYADRGITINYEYTAPVTPDAIDQVNRLEEAAGRGFDVIGVDVNDIKIVTPTINNLIDQGVKVMTFSSSDATKEDGCKRIAYVGNTHNYQDGADLAEILAEKIEYKGQVAALAGTIGAPCHEDRIKGFKDVMEKYPEIEVVEIQNDNDSVENALTFTEGFLQKYPDLKGIFCNNMGNPIGAAQAVVDAGKAGQIVLVGMDHDKRALEYLRDGVIQALGVQDCFKMGFDTIQVAIMIADGLEPGADTYPEQTEETTSIIYQGDAQRMLDMLYPAS

>HMPREF1090_01646_UniProt_A0A0E2HRQ3
MNENMMNRSYEVQVEGDSLGRYTAKTFGWMFAGLLITFIVAVGFAMTGTIFYVYSFRYWPLALLAAELGVVICLSARIEKMSVGMARSLFFLYAALNGIVFSAYLFAFSLEILWMVFGITALFFGIMALIGWFGNINFTKLRPFMIGGLVFLFFYWIFAMFIDLSAFDTIVSTVGIFLFLILTAYDVKKIQAFHAYYGQMPEMASKASIFSALQLYLDFINLFVYIMRILGRRK

msu.edu Reference: BMC Caller: a webtool to identify and analyze bacterial microcompartment types in sequence data
Sutter M & Kerfeld CA; Biology Direct 17, 9 (2022)
© www.kerfeldlab.org, 2022