Home BMC loci Shell proteins Help Locus database News Citations Contact

BMC type: PVMlike


Organism: Lachnoclostridium sp. Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.


   BMC-P    BMC-H/Hp    BMC-Ts/sp    BMC-Tdp    AldDh    PTAC    signature enzyme    AlcDh    regulator    others    no assignment

        DDW53_22370 (fasta)
                 DDW53_22375 (fasta)
                        DDW53_22385 (fasta)
                                DDW53_22390 (fasta)
                                      DDW53_22395 (fasta)
                                              DDW53_22400 (fasta)
                                                          DDW53_22405 (fasta)
                                                           DDW53_22425 (fasta)
                                                             DDW53_22430 (fasta) HMMalddh_1_eutpdugrm PVMlike (HMM details)
                                                                DDW53_22435 (fasta) H_mint PVMlike (HMM details)
                                                                    DDW53_22440 (fasta) H_cyan PVMlike (HMM details)
                                                                          DDW53_22445 (fasta) H_evergreen PVMlike (HMM details)
                                                                               DDW53_22450 (fasta) H_cyan PVMlike (HMM details)
                                                                                   DDW53_22460 (fasta) P_ocean PVMlike (HMM details)
                                                                                                DDW53_22465 (fasta)
                                                                                                       DDW53_22470 (fasta)
                                                                                                                              DDW53_22475 (fasta)
                                                                                                                                            DDW53_22480 (fasta)
                                                                                                                                                        DDW53_22485 (fasta)
                                                                                                                                                                   DDW53_22490 (fasta) HMM00465alcdh_3_mix PVMlike (HMM details)

BMC shell protein types:

BMC-H(map on tree)

       H_evergreen
      2x H_cyan
       H_mint

BMC-P(map on tree)

       P_ocean

(complete list of loci)

Protein sequences:

>DDW53_22370_UniProt_A0A353CP07
MSALKAFLQPPVTNVTKEVIISDRFKDDEGKPVPFVIKTITQKENENLARMSRKVSSVKGKPVESLDNILYTKRLILACVQEPDLSDQEVCRHYGTEDPLEVPSQMLSIGEYGRLSEAIMELNGMKDPEEKLEEAKNS

>DDW53_22375_UniProt_A0A353CP08
MSFLLEQDALNGKAGRAFAVIDGRNVEMFGLKKMQADAEFQEADFTVVGTNLVQKKTKGVTLTGSFTIYYGTPEFLNMLKTYLKTGRLPYFTIQITNDDKGTTVGAQTVALYNVKLSKLPIAILDDSVDYLSMDVSFSFTNVEILNAFGAPAQLGE

>DDW53_22385_UniProt_A0A353CP09
MTFTLTQLVDSISGALKESYPDISVYSNPNQQGTDVPCFFIFFMPTETENRVGRRFMRNVGIDVVYLIERNDPDVHDQLVSVADQLDYALEFIPYEDGKLRTYDREWKIDDGELHYQFTVKAIVSHPDNTPPIKSVESYEGGIKQNAN

>DDW53_22390_UniProt_A0A353CP10
MSTFGQATRKRLEQLRKQGQNVPKIMEEVMEGATIAAVERATELTPPNGSTISGTGTRSGDMAQAWELDSITKPVMTGGSVRTTLANNLQYASYVNDGHRMDQHFVPGLIINGNMLEKVDPKLGGITVGTNTPYVKGKYMKQAAIGRYKNVVRRELDKRVKENFK

>DDW53_22395_UniProt_A0A353CP11
MLFDNPIFENWYTDSMSISRNVPYKVGNIDKKKREEVHKDIPCRVYSTKRNGPSWKETAATATATDKVACDVSVDLKAGDMLMIVRGGLLGSNREPERYFAGLPQPYYDPVGGVLSGLEHQEAVLLMDEVIK

>DDW53_22400_UniProt_A0A353CP12
MSEQFHGLMSAAANMPQPGELGTYTKEMFLTDFPQFTKKQISQGEEEENQIVSLVPDPMLQIFISNSNASILPSRYGEIWRYAAGLYVAHFSALYLKTYSDGSATPARAAATGQQTGLVKEATMGDTTISYDNEAITEASAKWGAWNATQYGQQLVTMARMIGMGGMYVI

>DDW53_22405_UniProt_A0A353CP13
MLAVVVILLLTLWGVFYQSRKEGGREEKKSIRIGVTLYRGDDSFINTLRGNIEEQAKEYEKETGIKVVMDIVDAKGNQNTQNSQVDRFISLGYDAICVNIVDRSVASNIISKAMDASLPVVFFNREPVEEDMRRWEKLYYVGENAKESATLQGNILVDAYKKDPSSLDLNGDGKVSYVLLEGENSHQDSLIRTEWSIQTLKDGGVPLEKITGGIANWDRSQASAWMEQWLSEYPDEVEVVICNNDD

>DDW53_22425_UniProt_A0A353CP14
ARGRKGGSNVAAAIVNALLYQIQQQ

>DDW53_22430_UniProt_A0A353CP15
STLKGVGIGGEGHTTMTIAGPTGEGLTCARSFTRRRRCMLAEGGLRII

>DDW53_22435_UniProt_A0A353CP16
KFEGGIDDVKEACEAAKRAALKFNSPEEVLVEMIEKPYEGTKALSHITKVSFEEENIINFRR

>DDW53_22440_UniProt_A0A353CP17
MASTSIGLVETRGLTASIEAADAMLKAADVELVGTEKIGSGLVTVIVTGEVGAVKAATEAGEAAASRVGELVAVHVIPRPHQDIDKILPRIK

>DDW53_22445_UniProt_A0A353CP18
MKTNRNAIGVLEINYYANTVVVVDQALKADEVEIVSCHKKLGGRMCHTVLAGETSAVRAAVEAAREAGRIVGDDNVKVSVSIENPHPEVLKLLNMIDRHENEKNPVKPEEEEHKLKEDK

>DDW53_22450_UniProt_A0A353CP19
MAETAVKKGMLALGMIETRGLTASIEAADAMLKAADVEMVGTEKIGSGLVSVMVQGDVGAVKAAVEAGEEAASRVGEVVAVHVIPRPHNSIGGILPFLK

>DDW53_22460_UniProt_A0A353CP20
MILGTIMGTVVSTRKCRNLVGFKLLLVEPYYGDHKDTFVAADTIGAGIGELVLVTTDNTTQYALDRSAPVDAYIVGIVDAPPQPGR

>DDW53_22465_UniProt_A0A353CP21
MEQETLKILAVADPAVEGYLDKELGIIDGYGGNVDFHIVPWADYYPMMMKAFAGEADYDIVMVAGHLWLRDFVENGYLSELALEEEDILPVIAEEMKYKGKTYLSPSFCDGHMIVYRKSLLEQVLGKELGSVITPQEYIETAKAYKAACGERAVAMKADKSEIFTDALPFLRMYGGDAYDPDGSAACGKEDAVKGLKSYXDSAMGKLQRLSAKKEQLWQLPGAVRWVKCLRKAVWNQRIWDFPLFPRHGT

>DDW53_22470_UniProt_A0A353CP22
MGEVFKEGCLEPEDLGFSTFSTAWNVTWSFGICSSCRKKEAAEEFLSYLRSPEVDQKVGRKSGAPVRRGSYLKGAGDCPWFPVQQKMIELARPLPDLSKAGEKNGVLYEKIFEAFSGKKTAEEAMKEAGHKINSMTER

>DDW53_22475_UniProt_A0A353CP23
MKIIIIGGVAAGMSAASKIRRVDPDAKVTVYEKGGFLSGGACGLPYYVGDYNDDYRKMIARSRETFTKMGIETFLRHEVQSVDVERKEVLVKNLENGQEFADSYDKLMIAVGASAVVPPYPGKELMGVHVLKSMEDGIFLKEYAKMPEVQNIVIVGGGYIGVECAEAFLNLGKNVRMLEAAPRILMPFDEEIAALAHEELVKSGVLLNTGEKVEGFYGDGLYVKGVKTDKGTYDADLVIVAVGVRPCTEFLKNTGITMGKNGGLIVDREMRTSIPDVYAAGDCILVYNEVLEEDSFLALGTVANKCGRIAGANLAGGHEAFIGALGSAAIKVCGLELGRTGMGEGDAIRLTKDYKTLVIQANDHPAYYPDPTPITIKLIYEKGTKRLLGAQTCGQKGAVLRADVFAVAIHCRMTTAELGMTDLIYAPPFSGVWDAIQIACNAAK

>DDW53_22480_UniProt_A0A353CP24
MSKIMTLQEAAARIYDGDILGLGGNVLHRAPMAMVRELVRQKKRDLKLVKTAGAMDVDMLCFGGCVSSVDAGFISYESEYSLAGHYRRAVESGAVKGNEHACYTVISALRAASYGVGFMPVKGLVISDLIDANDYFIRVEDPFTKEPVTVVKAIRPEVAVIHVQEADEEGNARITGPLFEDVLFSRAAKRVILTAENIVHGSAFTGSSKKADIPHFLVEAVVRVPKGAAPCSCPGSYDIDGKNLKEFKGLKDLDGLNVYLKAFEKSDYKG

>DDW53_22485_UniProt_A0A353CP25
MMEEKNRVCDIMVCAMARLIPDGSKVFHGVSSHMPMIALLLAKALHAPGAVHLNIPGGTDPDPVRLKKYTSAGPELLERSTSYFPLMEVFDLAMRGGLDVAFLSGIQFDSRGNVNASVIGDYKKPKVRMPGGAGSAVLIPTAKRAILWRTKHDKRTFVNQVDFVTTRGNVERIITPLCIFKMEHGEMVLETIHPTSSLEEVQENTGFPIKYSHIAYTPLPTKEELNALKRIDPGDFRNIEF

>DDW53_22490_UniProt_A0A353CP26
MALERINAVGTSFFGRGSIGLLPDELKKRGFKRGLIVTDPFLYKNGTGDKVGACLLKAGMEYAIYYLVEPNPTTMVVGDCLEAAKALEVDLLVAVGGGSAIDTAKAVSIVMTNGGKVEDYEGVERSLNPGMPIVAVNTTAGTGSEVTSFYIVTDPVRHSKMCMVDPNCMVTIAVNDVDLMMSMPTALTASTGMDAMTHAVEAAVAKRATPYTDKDALWAMGMIG

msu.edu Reference: BMC Caller: a webtool to identify and analyze bacterial microcompartment types in sequence data
Sutter M & Kerfeld CA; Biology Direct 17, 9 (2022)
© www.kerfeldlab.org, 2022