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BMC type: PVMlike


Organism: Lachnospiraceae bacterium. Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.


   BMC-P    BMC-H/Hp    BMC-Ts/sp    BMC-Tdp    AldDh    PTAC    signature enzyme    AlcDh    regulator    others    no assignment

            CS063_15815 (fasta)
                     CS063_15820 (fasta)
                            CS063_15825 (fasta) HMMreg00356_1_pdu1d GRM5 (HMM details)
                                        CS063_15830 (fasta) HMMreg00072_4_pdu1d PDU1D (HMM details)
                                                   CS063_15835 (fasta) HMM10114PocR_2_grm GRM5 (HMM details)
                                                          CS063_15840 (fasta)
                                                               CS063_15845 (fasta) HMMreg00392_1_rmm1 SPU6 (HMM details)
                                                                 CS063_15850 (fasta)
                                                                          CS063_15855 (fasta) HMM00465alcdh_3_mix PVMlike (HMM details)
                                                                                   CS063_15860 (fasta)
                                                                                    CS063_15865 (fasta) P_ocean PVMlike (HMM details)
                                                                                         CS063_15870 (fasta) HMMptac_3_eut2 PVMlike (HMM details)
                                                                                           CS063_15875 (fasta) H_fuchsia PVMlike (HMM details)
                                                                                             CS063_15880 (fasta) H_fuchsia PVMlike (HMM details)
                                                                                                        CS063_15885 (fasta) HMMalddh_1_eutpdugrm PVMlike (HMM details)
                                                                                                              CS063_15890 (fasta) HMMaldol_2_pvm1 PVMlike (HMM details)
                                                                                                                    CS063_15895 (fasta)
                                                                                                                         CS063_15900 (fasta) HMMreg07702_1_RMM1 PVMlike (HMM details)
                                                                                                                                  CS063_15905 (fasta)
                                                                                                                                     CS063_15910 (fasta)
                                                                                                                                             CS063_15915 (fasta)
                                                                                                                                                  CS063_15920 (fasta)
                                                                                                                                                            CS063_15925 (fasta)
                                                                                                                                                                 CS063_15930 (fasta)

BMC shell protein types:

BMC-H(map on tree)

      2x H_fuchsia

BMC-P(map on tree)

       P_ocean

(complete list of loci)

Protein sequences:

>CS063_15815_UniProt_A0A2G3PUF4
MANVLLKMQNITKKFPGVKALDNVNLVVEEGEIHALVGENGAGKSTLMNVLSGIYPYESYEGEIIYQDEVCKFKEIKDSEEKGIVIIHQELALVPYMTIGENMFLGNEQGKTMAIDWDQTYNKADSLLQTVGLTESSKTLIKDIGVGKQQLVEIAKALAKNVKLLILDEPTASLNEADSRKLLDLLLQFKKEGLTSIIISHKLNEISYVADKITIMRDGSTIETLDKLTDDISEERVIKGMVGRELTDRFAKREKHAFGEISLEVKNWTVYHPFYTERKVVDNVSMNVRKGEVVGIAGLMGAGRTELAMSIFGKSYGSNISGALRINGEEVTLNSVEQAIEKKLAYITEDRKGNGLILSNPIRINTTLANLKNVSKGKNIDKDLEINVAKDYVNKLRTKCNSVEQEVGNLSGGNQQKVLLSKWMFTDPDIMILDEPTRGIDVGAKYEIYCIINDFIAAGKSVILISSELPEILGMCDRIYVMNEGRIVGELNQEEATQEVIMSQILNSSNHK

>CS063_15820_UniProt_A0A2G3PU81
MRKKLVSMLLASMLTATMLIGCGGKPASPASSEPAAPAKQEAKTEKAGSNKIGVAMPTKDLQRWNQDGSNMKNQLEQAGYTVDLQYANNDISTQVSQIENMITNGCEALVIASIDGGSLGTVLAKAKEANIPVIAYDRLIMDTDAVSYYATFDNYMVGTIQGNYIVDALDLKNAAGPFNIELFTGSPDDNNARFFFGGAMDVLNPYIESGKLKVVSGQKKFEEVATLNWSTEEAQKRMENLITAYYSDGTQLDVVLSSNDSCAIGISNALQGSYKGEKFPVLTGQDCDVAAMKNILNGKQSMSIFKDTRTLAAKVVEMVNAIMKGAEVPVNDTKTYDNGKGIVPTFLCEPVFADKDNYKELLIDSGYYTEDQLK

>CS063_15825_UniProt_A0A2G3PU90
MKRKHGIWFLIGICICTLGGCGSMNSYHTEEEKVREEKLVIGLSVDSFVIERWQRERDIFISKVQELGAEVNVQNANGDIDEQIAQIEYLIDKKVQVITVIPVDSRALTDVIKKAKSKGIKVIAYDRLIKDANVDLYISFDNKKVGELMAQNLVQTVPENGNVLMICGPLTDHNVLLMEEGFESVITKSNLNIIDKHYVEQWIPERAFAITNKYLQLSYKIDGIMGGNDAVAGQAIKALAERRLAGKVSVVGQDADVEACQRIVEGTQSMTVYKQVDELAKRAAEYAVKFAKGENVEILDTIFDGSFVVPYEKLEPIAVTKENMQEVIIDGGFHSQEDVYLNIPIK

>CS063_15830_UniProt_A0A2G3PU89
MYRIMLADDEGIVINSLKFIIEKHFKDECVIEFAKTGRHVIELAERFRPDIAFMDIQMPGINGIEAIKEIKKVSPSTLFIVLSAYDKFEYAKEAIHLGVLEYLNKPVNQKVIVEIIEKAIHLINKQREQRNHDLMVKEKLEIVVPIIESGLIYAILFQEECPEDRLQYHELLGIKEEYGYVMVLEYGDVIEKGNLTNVVGASVKAQSFSYTLREIIKQYFDCVIGANMTNKTVIFVPFGKSQLEYSDRINIIEKAREMLVRLRQKIEVEFRIGIGKVKDLERLVESYREAVTAMKNSKGKVAHFNDLPSNSIYIEEYPVELEQTLLNTICRGRFAAARTETEHYFEQLIRNYPSCEAEIKLKILEIVLHSEQKVFSSQGMVYDFRNRKNYLSDMTEIDSYELLKKWFLQKISEICTEVNTKKKDQSTLCIEKAKAYIQKHYAKDISLDEVSREVDISPYYFSKLFKEVTGENFIEYVTDIRIENAKRLLDRGISIKEVGIEVGYSDPNYFSRIFKKIVGLTPTEFKEVKC

>CS063_15835_UniProt_A0A2G3PUG9
MNRAISLIKSKWYSLKIRTKLITVFMFTFLIVLIINFFMYSNINAITRKIDKVYMSNVNLNQLIESLAAVQNSMTDYLNTKNSAALQEYYAWEQNYSKQMGNLNNEITDDDRLLMEKNIKSMSENYLRITNETMQAKRSRNVEKYKKYYEEASELFTHINTYIYSLNNGQFKYNSHNYQVLLSSLQYLETIVTIIIIVVIIASIVLIYFLTYSITNPLTELAEAANEIAKGHFDVSLIKNYALDEVGIVSRAFNHMIISIQEYIQRIKMNLEIENAMKEKELIIASHLKDAQLKYLQAQINPHFLFNTLNAGAQLAMMEGADTTCVFIENMADFFRYNIKKINEDATLEEELKLVDNYIHILNVRFVGEINYKKEVEDTLIKVRVPSMILQPIVENAVNYGIRDIEWEGRIELKVYEEDSFINISISDNGVGISESKIQEILQGKGGGSEKAKNSNGIGLDNVITRLRLYYGIEDVFEIISEGHNKGTQVIIHIPKVNKAVAC

>CS063_15840_UniProt_A0A2G3PUE5
MNKVGQGNKRALPIILYISIVSIFIITMFSFFYFRQKFFTIGLSKEVDYETYKKHYVMITSDTKSPFWEAVYQEARTEAKAYNAYVEYMGKNLSTPYDTKELLKIATNCNVDGIILEGDESEETTNLINKAVEKGIMVITVLKDNPKSKRQCFIGVNNYNLGKLYGEQVLALYKGEPERVLVLMDSGSSDTNQNIVYSSIKETIYEGLKESDTVELQAVSIRNDNRFSSEESIRDIIMDVKHLPSIMICLNDIDTKCAYQAVVDHNKVGEIDILGYYDSQDILAAIQKQIVHSTVAIDSKEMGSLCIWALEEYKTSGHVSSYLTADMEMITMKELDIYLQKMNEVGTTP

>CS063_15845_UniProt_A0A2G3PWK0
MIEMKNNFTPRYYQLKNIIIDMIENEEIGVDECIPSEPKLMQTYNLSRTTVRKAIDELVNEGYLYKKQGKGTFVKGRGFEQGLIKLSGCSEDIRRYGLEPKPYVLRAEIEKPSKKVAKMLGISQDEEVFYMERVIYGDDIPINKNKSYIPYQFFKGIEKIDFSQESLYKVLEKDYGAVIKRAIRTVEAILASEEIALQLKIKEGAPVMLFKGQVYAQMQGKEAIIEYFEAIYRSDQFQFYIEQHR

>CS063_15850_UniProt_A0A2G3PUB2
MYDLPNCPKCNSPYTYEEGSLLICPECAHEWTVQSKTDASEEQKVIKDANGNILQDGDSITVIKDLKVKGSSLVIKMGTKVKNIRLVEGDHDIDCRIDGIGAMKLKSEFVKKL

>CS063_15855_UniProt_A0A2G3PUK2
MDGERISAVKLSLFGKGALKLLPEELKKMEVHRALIVTDTFLYENGTASQVGATLLEAEVEYAIFYEVKSNPTVEVVNNCIKVARTLQVDCIVAVGGGSAIDTAKAVSVVVANGGRIEEYEGVNKSRRPGIPIVAVNTTAGTGSEVTAFYIVTDSVRHSKMAMIDSNCMVAIAINDVNLMLSMPPELTAATGMDALTHAIEALFSIRATPLTDKDAIWAMEVIYAYLPQAVLNGRDEQARRMMAYAQNVAGMAFSNAGLGMIHSMAHALGGYYNLPHGICNAILLPYVLEFMGDYSEVQPRFEVLLKAFKMPQGYCLGYRQIVRQSIVAIRKLLEQIGIVPHLRALEKVEPKDFEILAEQAIKDTCMKDAFIKPTKEQIIKVYEKAYEGNRNKIVK

>CS063_15860_UniProt_A0A2G3PUC9
MKIIIIGSVIAGNSVIHKLVDTESDVQITAYEKGRFMACGTYGLPYYLGKKESSIGEIIAHKREELEKENIQINYCHEVIGLDVAVKRVTIKNLRTNESFIDTYDKLIIATGSTSLIPHVPGADKMGVHVLNSVEDLIFLKEFTKTPYVSDIAILGGDFAGLEIAKAFLKLGRNVRLIEESTRLLPSFDTEVASHIMKELKAQGMEVILGARVTGFTGGTFVENVQTDKGTYPCDLVIPTNITRPNTFLLQHTPIAHDEQGAIIIDKELKTSISDIYAIGGCTAPIENPEETLSLHIAQMEMARTGMSEEQAIQKGLAIQTVMKVANDRPSICPNPNQIAIKLIYEAQTHKILGAQAWGKKNVCARINALAVAIAAGMTTEALAQVNFIYSSSTNTMWDPIQVACHAVR

>CS063_15865_UniProt_A0A2G3PUD4
MILGTVKSTVVSTRKMPNLVGYKLLLIEPVYGNINQLIVAGDSIGAGIGEMVLVTTDTTTQYAIDRQAPIDAFIVGIVDAPPVEGK

>CS063_15870_UniProt_A0A2G3PUG6
MVYYNVTEEQIVGIIRDRVEREMQITKLFAENKKLVPTGISVRHIHLSRQEIDKLFGEGYELTFKKGLSQPGQFACKETLKLIGPKGSIEKVRVLGPARHKTQIEVAFSDARQLGISPPVRTSGDIAHTPGVILRGPQGECLLSEGVIIADRHIHMSPVQATYFNVSAGDKVCVKVEGAKAGIMDNVTVRIGADYWLDFHIDTDDGNAFRLSQGQYVTVLDKKEA

>CS063_15875_UniProt_A0A2G3PUI8
MAEVTKTEVVKLQAVGMIETYGLIASIEAADAMLKAADVSLIGSEKIGAGLVTVMVQGDVGAVKAATEAGVTAASRVGECVSVHVIPRPHTSVSTVMPKLR

>CS063_15880_UniProt_A0A2G3PU88
MRAIGLIETKGLVGNIEATDAMLKAADVELIGSDTIGAGLVTVVVTGEVGAVKAATEAGAEAASRVGELVGVHVIPRPHADIIHILPKPGPATK

>CS063_15885_UniProt_A0A2G3PU98
MDISTQEIERIVKSVVAGLSKETSANEFSTITSYTATESPPKRNIKGEWGVFEDVELAIEAAYKAQIDWVTHYKIYERQRVIENIRRIARQNIETWCHLIIEETQMGRYEDKLEKHLAVINSTPGPECLITEAMTGDSGLMLEEYAPFGVIAAITPTTNPTETIINNTISMIAGGNAVVFNVHPRAKKVCTLCLQTLNKAILEAGGPENLITMTREPSLENVDKLAASPQIRLMVGTGGMGMVNKLLHSGKKTIGAGAGNPPVIVDETADIELAASQIYKGASFDNNILCFAEKEVFVVSSHLQGFIYNMKKQGAYLIENHQIHTLLEKVFVLKTDGNYDVNKDWVGKDATCILESIGIYAPKECRLIICEVPANHPFVMVEQLMPILPIVRCENFEEAMQKAVLAEQGNRHTASIFSKDVNHMTQFARAIETTIYVKNSATMAGVGIGGEGHTTMTIAGPTGEGITCARSFTRRRRCMLAEGGLRIV

>CS063_15890_UniProt_A0A2G3PU99
MITIKGVTYPSDFEAKKKIIEVGKRMEEKGYVIGGDGSMSMRVGPNAVWITLLGADKGALTQDMIVRIGIDGKQMYTVSSKTLPEDWEWHLEIYKENPSLRGIIHSYPPKINAWGIKGLSIKQAVFSPAIKKLGAMELLQGNYNGQDISMQSKYQKGVILQNDGCMVWGENIVEAYQSLQAAEYYVTVMETTNKCLDRTMQDATREDYTVPIQKERIAPTYHGELKGVTAIVSPKSGMKEESSSAVSVSKAIEAPKVGERRMPHIEEQKQENVNDKIRTAVMEEVVHRTMAQFNS

>CS063_15895_UniProt_A0A2G3PUH8
MKKILLSVAPVAATDILINPRAIAKDVIACSKAGAGMVHLHVRDLNGRLTSDLTLLEETIRYIKEQCDIVIEISTGGVSNLTIEERCAPVYPTWVEANSLNVGSVNLGDAVYQNPIKDVHYCVEQIIKNGKIPEIEVFEIGMINTVRELALRYDFIKPILFAIVLGHIGAMPATIGALKAMLEGLYLNFPNREEVLWGITHAHRKDWEIIKAALDMGASSVRIGFEDSDYLNPLTQVDNNAVLVAEASDIIKSKGMMPATPDEIRTMLHIPKHPMF

>CS063_15900_UniProt_A0A2G3PUF6
MNKRIKDTTIGSRSVVDRVVDGIITDIIEGKIEPGAQLPTEPVLCQEYDAGRNSVREAIKKLEAYGIVYIKRADGTYVSETYNQKMLDPMLYNIILGKNSWDDFVELRRVIEIGTLHVVVERPSDSIDTEKLHKAIDEMERELYKDHPLADKVLELDANFHRQIAMITNNPQLVSITEYITRLTLPSRRLTVKEVIGRGEKENFIKLHRQMVDLIEEREATQIEQIISNHYVYWK

>CS063_15905_UniProt_A0A2G3PWL1
MIAWLLIAFFVLIGLGLPIAMSLGLAAMGGILFLDGGSFVTVAQRMFEGMNSFALLAIPLYTFAGFTMSKGGISQRLMDFCYSIVGHFTGGLAHVNVLSSMIFAGISGSAVADTAGVSGMMMPQMVKKGYSKKLTVAVTAISSTIGIIIPPSIPMVVIAGILGISTGKLFLGGIIPGILLGIAQMIVSYFLAKKEGVPKESGHTSIKEILMNAWHSMPALLMPIIIVGSITTGLVSPTEAGAIAVVYGLIAGGLIYKELKWKDIQFAFFETAKTSGKIFIIIGAAKLYTVMLTTAGFDKWVADTMLSISDNPTVILVIILAIFFVVTMFMESIATLTLFMPIIYPIAMAVGIDPVVMSVLITVVIGIGLVTPPVGMCIYVACDLMDMRVGQVMRTLMPYLGATFVVIALLIAFPQLILLPTFLMN

>CS063_15910_UniProt_A0A2G3PUL1
MLKLQKVIDTLTTVISSVLCGLMMTILVFNIIMRYMPGVGGVKWYMESSQYLNVWAMFIVGIAITAKNEHLRVNLAEDLAQKYPVLNKLQRILMALLSACFYLGIFYSGYILTTKAKQTISTMPKFKMAHVYSMIPITAALCVVSVIISLVVDLKYKNTHEKEETV

>CS063_15915_UniProt_A0A2G3PUD9
MKKVFALVLTCVLSMSMLVGCGGASTKQENAKEAPVTESKPKEETQTTAQEKIVLRIGFSTNEEDPRAKGAQQFKEEVESKTNGGVAVELYPSGQLGGDADLISSIALDSKTVDIIITDASNFATYEPKMGISALPFSFSDFESAWAFMDSDIQKEVEELLLDQNMRVLAHYDNGFRCVTNSKKPIETPADMKNILIRTPENPIIMATMTALGANPQPLAFSELYQALQQGTYDAQENPIPVIYNNNLYEVQGYLSVTNHIYSGMCFTIAESTWKKLSPEQQTIVSEAALSSATFNRELNKKQTQELVSKLEEKGVKVNYPDISLFAEATASVAEESKETYGNLLERFAAWKESR

>CS063_15920_UniProt_A0A2G3PUE7
MKIGLIYTSTTPELIELVEEEVKKQLGLNIELCNYQDASILAETRNAGYVTKTAAAKLISMYMQAVNDGVDAMLNLCSSVGEVADVMQEAAKYLGTPIVRVDEEMCKEAVRRGEKIAIMATLSTTLEPTKNTIKRVARELDKHVELTDVLVDGAFGLDQEQFKVLMEENAKEVANKVDVILFAQGSMAYCEQYISERCKKTVLSSPRFGAIELKKALIAKGIIVD

>CS063_15925_UniProt_A0A2G3PUH4
MEPKINSAILQIHPKIDDVWVNQLLTTEVTRSNKKIIVLDDDPTGVQTVHDVSVYTDWSLESLRTGFQEINKLFFILTNSRSFTVEQTTKVHIEIAQNIDKVAKECGKEYIIVSRGDSTLRGHYPLETKLLCKIVEQRGGKKVDGEILCPYFREGNRFTIDNIHYVKYDDRLIPVGQTEFAKDRTFGYNSSHLGEYIEEKTQGEYKAADVTYISLESLWNLEFDKIEAQLLAVKNFGKIVVNAIDDRDVKVFCIALYRAMEKGKSFMFRTAAAFVKALGNIDDKPLLKQEEMINNQSNKGGIIVVGSHTKKTTAQLEELKQLKDIVFMEMNSDLVLKKGGLEEEVKRIVEKSEEWINKGVTVAIATKRTLLEVDNDTKEQALIRSVQISEAVQALVGNLYVTPAFVMAKGGITSSDVGTKALKVKRATVLGQIRPGIPVWKIGQESKFPGIPYIIFPGNVGEVQTLREAVEILKGKMNN

>CS063_15930_UniProt_A0A2G3PUA0
MKIISAKDYYYMSRMAANIISAQIIMKPHCVLGLATGSTPIGTYKQLIHWHKKGDLDFSGVTSINLDEYKGLSPDNDQSYRYFMNHNFFYHININLKNTYLPNGLEKDSEKACKDYNHIIQTSGGVDLQLLGLGLNGHIGFNEPGEAFEKQTHCVNLTPSTIDANSRFFENPDDVPKQAYTVGIKTIMQAKKILVIVNGANKADIVKAAFFGPITPSVPASVLQLHNDVTLVGDETALAKLDLAQ

msu.edu Reference: BMC Caller: a webtool to identify and analyze bacterial microcompartment types in sequence data
Sutter M & Kerfeld CA; Biology Direct 17, 9 (2022)
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