Home BMC loci Shell proteins Help Locus database News Citations Contact

BMC type: PVMlike


Organism: Clostridium asparagiforme DSM 15981. Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.


   BMC-P    BMC-H/Hp    BMC-Ts/sp    BMC-Tdp    AldDh    PTAC    signature enzyme    AlcDh    regulator    others    no assignment

        CLOSTASPAR_02201 (fasta)
             CLOSTASPAR_02202 (fasta)
                            CLOSTASPAR_02203 (fasta)
                              CLOSTASPAR_02204 (fasta)
                                  CLOSTASPAR_02205 (fasta)
                                        CLOSTASPAR_02206 (fasta) HMMreg00455_1_GRM5 PVMlike (HMM details)
                                         CLOSTASPAR_02207 (fasta)
                                          CLOSTASPAR_02208 (fasta)
                                                  CLOSTASPAR_02209 (fasta) HMMaldol_2_pvm1 PVMlike (HMM details)
                                                              CLOSTASPAR_02210 (fasta) HMMalddh_1_eutpdugrm PVMlike (HMM details)
                                                                CLOSTASPAR_02211 (fasta) H_mint PVMlike (HMM details)
                                                                  CLOSTASPAR_02212 (fasta) H_cyan PVMlike (HMM details)
                                                                   CLOSTASPAR_02213 (fasta)
                                                                      CLOSTASPAR_02214 (fasta) H_evergreen PVMlike (HMM details)
                                                                        CLOSTASPAR_02215 (fasta) H_cyan PVMlike (HMM details)
                                                                             CLOSTASPAR_02216 (fasta) HMMptac_3_eut2 PVMlike (HMM details)
                                                                               CLOSTASPAR_02217 (fasta) P_ocean PVMlike (HMM details)
                                                                                    CLOSTASPAR_02218 (fasta) HMM00465alcdh_3_mix PVMlike (HMM details)
                                                                                        CLOSTASPAR_02219 (fasta) HMM00465alcdh_3_mix PVMlike (HMM details)
                                                                                                   CLOSTASPAR_02220 (fasta)
                                                                                                                  CLOSTASPAR_02221 (fasta)
                                                                                                                   CLOSTASPAR_02222 (fasta)
                                                                                                                             CLOSTASPAR_02223 (fasta) HMM13382deam_1_buf1 PDU1F (HMM details)
                                                                                                                                      CLOSTASPAR_02224 (fasta)
                                                                                                                                               CLOSTASPAR_02225 (fasta)
                                                                                                                                                   CLOSTASPAR_02226 (fasta)
                                                                                                                                                              CLOSTASPAR_02227 (fasta)

BMC shell protein types:

BMC-H(map on tree)

       H_evergreen
      2x H_cyan
       H_mint

BMC-P(map on tree)

       P_ocean

(complete list of loci)

Protein sequences:

>CLOSTASPAR_02201_UniProt_C0CYX4
MDMFFGAVKAFFDTFSAVVFVPMIMFVINLAFKVKPKKAFISALSAGVGLQGFNLVIGAYGPIIEPIITRMVETSGVNLPVYDAGWPNTSVVAYSTQAGMVFVVIAILLQVGLFLSRYTTVFQAGDLWNNYSYFCWGSMLYVLTGNMFLAICLMTMQLLITLLITEVIAKRWSTYYGYPGCSIASLHTATVAVIAIPLNWLLNKLGLYKIQMDPNGMRKKLGIIGEPMTLGLILGILIGFVGNITRITQLAAWGEILSCGVATSAVMSVFPKISSIFSGAFTALTEASKK

>CLOSTASPAR_02202_UniProt_C0CYX5
MNDATGYGETATLVSGLLTMPIILLLAFVLPGNTTLPMVDLVAIPYVIQPIVAMSNGNVVKSVIGSTIVCIIFLYICSACGSTFTEVVKVAGGSLGSGGAMMVTSFIIIGQPIGYLTFLIFASQNPILIALLVAVYAVSYVLIRKNKEKIYAALENQALNPGGIASAAQ

>CLOSTASPAR_02203_UniProt_C0CYX6
MLHCLNGSAAFLTTDFSRGEQTGFEEETNMVTHQGNPVSKGAAVGRVYKYVPYQAVVEQTGIRPEQAEEELAAYRAARERAGAELSAMRERLGEGDADKAAILGAHAEILADPALDEMVSGLIRDEYYNAKWAVDRAFSKFIKMLSRVKDDMIRERIADMKDVRLRLLRSCDGAGEVNLGALTEPVVVVAQDLFPSDTASLKREMVLAIVTEVGGATSHTAIIARSYEIPALLGVSGAMDLLTDGQVVGVDAIDGVLATDLSPEETAALEKKGEACRIHALETRKYQGAEPVTGDGVRIDVELNIGSASPEELEAACFTDGVGLFRSEFLYMGRDTLPGEDEQVEIYTRVLKAFEGRPVTLRTLDIGGDKKLDCLELPKEENPFLGNRALRLCFTYPEIFKTQLRAALRAAVAGDLWIMFPMVGSMDDIRRAKAALREAEEELKAEGKPFGPVKTGIMIEIPSIALIADMAVREVDFASIGTNDLCQYATAVDRMNPAVSAYYQKYHPAMFRLIRTVVETFNRAGKPICVCGELGGDELAAAVLVGLGMRKLSMGRAFVAQTKKMITGMTISRAREIACKVCDMETAAEIQEYLTSELRDIL

>CLOSTASPAR_02204_UniProt_C0CYX7
MVKGTTVIKNKTGLHARPASDFVQAAGKFSSSITIRRVDEEDDEANAKSIIFLLSLGLCQGEAVEITAKGDDEQEAVKTLIELIDSGFGE

>CLOSTASPAR_02205_UniProt_C0CYX8
MRMVFNFKMSLEDYHQMMVSRTFGNSWIRRIILLVVWLVFTGLIVLDLTGVIELTRIVHVCALLVAVSFPAAVITMEINVSKYKDAYLSGFKAERQIVADEEGLTFCNRSTGESGSNPWGEVTKLEELKDVFVIQLNRREAVILPKRGMGNTKKVDQFREMVKEKIPERFYPLKRSVFR

>CLOSTASPAR_02206_UniProt_C0CYX9
MLAVTRKSEIKDIVLEKKSVTVTELAKIFSVTEETIRRDLKQLESEGFLTRTYGGAFIQDGVENNIDLSIRETAYLKNKQAIASRCRELIHNGDSIFLDSSTTTLTIAKAINDMRLTVVTNSLMIINELCDKANIHLIAIGGNYTPRDKAFNGLSTQACLETFYLDKTFMSCRSLSMEHGITDSLESVAAVRQSLAQRSKEVYLVADFSKFDKTSFIHIADFDAITGLVTDRKLSSQWVDFLNSHNVAVYEAQNE

>CLOSTASPAR_02207_UniProt_C0CYY1
MRLQAVVCWQIQKKYIKKLAKTKRNKNNQKQNVDETIQTQYNMVISPCGPRSAARD

>CLOSTASPAR_02208_UniProt_C0CYY0
MPANNSLQTHFLFEFSFLYAIIKENLYGYLHKKEAICLP

>CLOSTASPAR_02209_UniProt_C0CYY2
MMTIQGMKYKSDFEAKKAILDIGRRMYAKGFVASNDGNISCRVGPNTIWTTPTGVSKGFMTQDMLVKMDLDGKVLMGRLKPSSEIKMHLRVYQENPRLQAVTHAHPPMATCFAIAGQPLDAAILTEAILSLGTIPVARYATPGTQEVPDSIAPFVNHYNGVLLANHGALTWGDDIYQAFYRLESVEYYATILMYTGNIIGQQNHLSCEQVDRLLEIRKNMGITGGGVPPCMNGGQLTKVCESCAAAGEKTAAAGTELAGGSCGGCAAAGGTQTGPQAPLKGVTPLVRPGDAGKMPGGGLGAGSGSPSTGSGPADKDALIAEIVRRVVVQLKA

>CLOSTASPAR_02210_UniProt_C0CYY3
MEIETRDIERIVRQVMAAMEQQGTIAGGAYPPAPGITAPRGDNGVFERVEDAIDAAWAAGRVWAFHYKVEDRRRVIEAIRVMARENARTLAQMVRDETGMGRVEDKVEKHLAVADKTPGVECLTTDAISGDGGLMIEEYAPFGVIGAITPSTNPTETVIHNTISMIAGGNSVVFNVHPGAKKCCAFCLQLLNKTIVENGGPANLITMQRDPTMDAVNKMTSSPKIRLMVGTGGMGMVNALLRSGKKTIGAGAGNPPVIVDDTADVKLAARELYWGASFDNNLFCFAEKEVFVMEASADGLIRGLVEQGAYLLTPAETEAIVKLALIQKDGKYEVNKKWVGKDAGLFLQAIGVSGHENTRLLICDVPKCHPYVMVEQLMPVLPIVRCRTFDECIQCSVEAEQGNRHTSSIFSTNVYNMTKFGKEIETTIYVKNGATLRGLGIGGEGHTTMTIAGPTGEGLTCARSFTRRRRCMLAEGGLRII

>CLOSTASPAR_02211_UniProt_C0CYY4
MAIGFLECAGYGAVLYAMDRACKAADIEIIGIDTINPKDASAFIPLTAQVKFAGSVDDVKVACEVARRAALKLNRPEDVLVEVIEQPYDGTKALACISKVKFQEEAE

>CLOSTASPAR_02212_UniProt_C0CYY5
MAATAIGMIETRGLTASIEAADAMLKAADVEMVGTEKIGSGLVTVIVTGEVGAVKAATEAGEEAASRIGELVAVHVIPRPHDDVRKILPGLK

>CLOSTASPAR_02213_UniProt_C0CYY6
MTGGRRRLRRAGGRRRRSRPADDGRPMAGGAGADGQAGGLYRHRRAEIGA

>CLOSTASPAR_02214_UniProt_C0CYY7
MINLRQSAIGVLEVSYFANTVVVVDQALKAAQVELVSCHKRLGGKMCHTVLAGSTSGVEAAMEAARAAGRIVGEHNVKVAVTISNPHPQVLKLLNMIENHEAEKAAAGEEQTAADHKTGENPRDLKRERRTKNGRGN

>CLOSTASPAR_02215_UniProt_C0CYY8
MAEGIKRGMLALGMIETRGLTASIEAADAMLKAADVELVGTEKIGSGLVTVMVQGDVGAVKAAVEAGQESASRIGELVAVHVIPRPHGSVGAILPFLK

>CLOSTASPAR_02216_UniProt_C0CYY9
MWDRENMAARVAELVAAQVREFAGGYYRVPVGISARHIHLTREDVEALFGPGHRLTPMKPLSQPGQFACEEQVELVGPRSSIARVRVLGPERPASQVELSGTDCLKLGIDAPVRTSGQLSGTPGITVKGPVGVLELSAGLIIADRHIHMTPEDAGWFGVEDGERVSVRVGGPRGGLMGQVVIRVSEKGRLDFHVDTDDANAFRLKQGQLLELVKEGTR

>CLOSTASPAR_02217_UniProt_C0CYZ0
MILGTIRGTVVSTRKCRNLVGFKLLLVEPYFGDKAQLFVAADTIGAGIGELVLVTTDETTQHALDRSAPVDAYVVGIVDAPPQLGK

>CLOSTASPAR_02218_UniProt_C0CYZ1
MGRERINAVTTSFFGKGSIGLLPGELKKRGYRRGLIVTDRFLFEHQAADRVGEQILAAGAEYAVFYLVQPNPTIQVVNDCIQAAKALEVDFLVAVGGGSAIDTAKAVSIVIANGGRVEDYEGVNLSARPGLPIVAVNTTAGTGSEVTSFYIVTNPATHSKMCIMDTNCMVSIAINDVDFMMTMPPGLTASTGMDAMT

>CLOSTASPAR_02219_UniProt_C0CYZ2
SVRATPLTDKDAMWAIRVIKDYLPAAVKDGQDVKAREMMAYAEYTAGMAFSNAGLGIVHAMAHALGGHFNLPHGICNSVLLPYGMKFNGKSPNASGRFQLMAEALELPGAAKMADRQAAEVCVNYIRGLSKSLGMPQTLKELKGVDPEKFGDLADLAVKDFCMGDNLVRADREQVIEVYGEAWRGGI

>CLOSTASPAR_02220_UniProt_C0CYZ3
MRRRGLAGGIRWFAAGTGLILVLLLAGRAAGTAAENLDRDACRRAVETGGRWLVDYVWHQARPGSGGTGGRTGDGWETGDPDPAYRQYEAVKTFYEEHQYLAWYGNEETGETKAENGETQNGETTAGQTGDSGTDQSAGGAQALAQGETGAGAVPAGAALVGVTSRAVTGPTYVMEQLADYDFLMKHFYSVHTSTTAGRDEISAARLLGEDLSIGEDNSKPQILIYHTHSQEAFKDSGPGETVVGIGNYLTELLTAKGYNVIHDTSVYDLVDGKLDRSKAYTYAYDGISKILEENPSVQVVLDIHRDGVGESLHLVTDVDGKPTAQIMFFNGMSQTPEGPIEYLQNPYREQNLAFSFQMQLDAQAYYPGFTRKIYLKGLRYNLHLRPRSALVEVGAQTNTYEEARNAMEPLSELLDMVLQSSRKNDTIQ

>CLOSTASPAR_02221_UniProt_C0CYZ5
MSIVDQSKIRNFCIIAHIDHGKSTLADRIIEKTGLLTSREMQEQILDNMDLERERGITIKSQAVRTVYKAKDGCEYIFNLIDTPGHVDFNYEVSRSLAACDGAILVVDASQGIEAQTLANVYLALDHDLDVFPVINKVDLPSAQPDHVAAEIEDVIGLDASDAPRISAKTGENVEAVLDAIVEKIPAPNGDPEAPLQALIFDSIYDSYKGVIIFCRVMEGTVKRGTPIRLMATGAEEDVVEVGYFGAGQFIPCDELSAGMVGYITASIKNVRDTQVGDTVTNRDNPCAAPLPGYKKVTSMVYCGLYPADGAKYNDLRDALEKLQLNDASLFYEPETSVALGFGFRCGFLGLLHLEIIQERLEREYNLDLVTTAPSVVYRVHKNNGEMIELTNPTNLPDPTEIDYMEEPIVSAEIMVTTEFVGSIMTLCQERRGVYLGMEYIETTRALLKYELPLNEIIYDFFDALKSRSRGYASFDYELKGYERSELVKLDILVNREEVDALSFIVHAESAYDRGRRMCEKLKDEIPRHLFEIPIQAAIGGKIIARETVKAVRKDVLAKCYGGDISRKRKLLEKQKEGKKRMRQIGNVEIPQKAFMSVLKLDDE

>CLOSTASPAR_02222_UniProt_C0CYZ4
MFYPLSYGLKMERFRRSAQNQLFRRLNCCLDWRAACPPLTE

>CLOSTASPAR_02223_UniProt_C0CYZ6
MTKLLFYNGIILSEHGEINDGYLTVSDGIIERIGKGTPPPLDGGYRKVDLNHHILSPGFIDTHTHGAGGADFMDGTLEAFLMACRMHLKHGTTSIMPTSMSCFDDELFQLFDCFEQAKPIRENMPHLLGLHLEGPYFSPEQAGAQPAECMTVPFPHHFDKIIDRSGGNIRRWSSAPEVPGVIELGDTLIKLGILPSIAHSDADYDVVRKAFDAGYRHLTHFYSGMSTIHRKNGYRILGVVESGYLLDDMHIEIICDGIHLPPELLELIFKLKDHDHITLVTDSMRAAGMPEGPTVLGSLKYNFQCVAEDGVAKMPDRSCFAGSTATADRMIRVLVKQLHMPLWDAVKFMTQNPAKLYHIFDWTGSLSVGKNADLLVFDSDINIEQVYVSGVRMGQDS

>CLOSTASPAR_02224_UniProt_C0CYZ7
MESMKDNSEKKLVTIKDIAEKSGYSIATVHRALNHKGGLSEDTRMKILNVANDLNYTNNYIASALSRKSIDIAIVLPNPQGFGKYYFSYMIKGIRNCYEELYSYNINLLECYYDKEESEEEGQIKRLQQLYFEKDHVLQGLIIAPISNSEVLVKTLQAFAREGTKIVFIDDDLPEVNRICCVAPSDEYIGNLGAELMSHMLKKQDGKILLAAGNPAQSAHTLNAKGFISYMKQYRPDIEVIVAEDGRDAQASYQNLKKLLHETDDIVAAYSVRAKNSIPLCRAIQDTGRIDDISIIGSDLFLETEELLESGVLSAVIYKNPYQKGYRAFQILFDAVIKNISPKEELIYVPISIILRSNLRFYKEFI

>CLOSTASPAR_02225_UniProt_C0CYZ8
MLNFKGGKFMKKQIALATAAAMVLGLAACGSKPAETKPAETAAQTKTEAVTEAEKKETEPKETEGSAAAITFKLADNQADGTPNVSGDTKFAELVNEYTGGTVVVEIFPNGTLGDEASVADMLEADTLDIARISTNGISPSCDAFNVFGMPYVFPSDEIKYKALDGEFGQTLTAKLEEETGLINLAYFVSGPRSFYTTKKEIHSVADMAGLKLRAQDDAITIAMMEALGASATPMNYAEVYSALETGVVDGAENDFTSYYSSGHYEVAKYYSLDMHTAPSSLLVMSAGAWNSLSAEQQEQVRKAAAEAETYQRTLVEDYIAESRQKVEEGGATIIEVDVAEFQNACQPVYDKFPQYNDLIALIPAE

>CLOSTASPAR_02226_UniProt_C0CYZ9
MNRGIERAEHLFRRIIKLEEAICVVLQIIMLLICFAAVVKRYFFNAPWAWTDEIQLLLLVIYGYLAISIDVYRDNHVALTGMYKHLSKRGKVVLDLIRHVLLGGFFCLMTYYGWKVYGIKARKLLTVTHLSQGIVFMAQTICAALMVLYCLMNFVKAVKGFREASANEV

>CLOSTASPAR_02227_UniProt_C0CZ00
MTESSIAIMILFGTLIVLMFIRIPIAFSLGISAVVTALYMDIPLMNLFMKMVTSLQNFVIVACPFFVIMAQVMGDGGITKRLMKFCNLIVGRIHGGTALVNILVSMLFGGISGSSTADVSSIGSMLIPAMVDEGYDADYSVAVTVTSSLEGVMIPPSQNMLYYAVASASGISISTLLICGFTPGVLLTLGLAIPAYIVARKRNYPLSEKFPRGERLKVTLDAMLGLGAIIIVVVGITFGICSATESASLAAVYAIAITLLFYRSLNFKQMIKAIKAVTPIMSMSLAIIAASNAFSYVMTSLRVPTLLAEFLLKLSSNNNVIMLLMLVLMLILGCFMDMGVLILLSTPILYPIAVNSLGWNPYQFGVILVFAFAIGLCTPPVGTSLFIGCKIANIPVESSIKAFLPFYIIMMILLILFTYIPALSLGLPMALGLL

msu.edu Reference: BMC Caller: a webtool to identify and analyze bacterial microcompartment types in sequence data
Sutter M & Kerfeld CA; Biology Direct 17, 9 (2022)
© www.kerfeldlab.org, 2022