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BMC type: PVM


Organism: Verrucomicrobia bacterium. Bacteria; Verrucomicrobia; unclassified Verrucomicrobia.


   BMC-P    BMC-H/Hp    BMC-Ts/sp    BMC-Tdp    AldDh    PTAC    signature enzyme    AlcDh    regulator    others    no assignment

                           DME25_18745 (fasta) HMMreg13556_3_MIC1 MIC1 (HMM details)
                                                  DME25_18750 (fasta)
                                                               DME25_18755 (fasta)
                                                                    DME25_18765 (fasta)
                                                                                DME25_18775 (fasta)
                                                                                          DME25_18780 (fasta)
                                                                                                DME25_18785 (fasta)
                                                                                                                   DME25_18790 (fasta)
                                                                                                                                   DME25_18795 (fasta)
                                                                                                                                           DME25_18800 (fasta)
                                                                                                                                                DME25_18805 (fasta) H_blurple PVM (HMM details)
                                                                                                                                                      DME25_18810 (fasta) P_dirtyPink PVM (HMM details)
                                                                                                                                                           DME25_18820 (fasta) P_slate PVM (HMM details)
                                                                                                                                                                 DME25_18825 (fasta) P_adobe PVM (HMM details)
                                                                                                                                                                     DME25_18830 (fasta)

BMC shell protein types:

BMC-H(map on tree)

       H_blurple

BMC-P(map on tree)

       P_slate
       P_dirtyPink
       P_adobe

(complete list of loci)

Protein sequences:

>DME25_18745_UniProt_A0A2V5P073
MLSTGLDELAELKARYDRLHLLYQVGNVLHSTLDPQEALQLILDQAVRLMRASSGSTLLLNPTNSLLEIHAAKGLPPEAADLKFPLGRGIAGWVARTGKPARVGDVSRDARYLKVQPEVRSELAVPLEVNGQVRGVLNVESERSEAFTAEDQQLLEALAVQAAKVIHHTWLYEQLRLKVRLFEALDSVSRAINSALNLDDALQVITREACALMQAKVCSLRLLDPSRQWLDLRASCGAGQAYLKKARLSVEESFLGTLVRRKKPLQVENAQTSARYQNVEVARREGLFGLLSVPLLFGGEAIGALSVYTAQPYVFSNEEIRILASLAELSAIAIHKARLYERVVDVEEQLRQNEKLSALGLLAAEVAHEIRNPLTVMKMLYHSLDLKFPAADPRAEDARIIGQKIEHLNKIVEQILDFARTNEPKLAAVNLNELIEELGLLVRHKLQN

>DME25_18750_UniProt_A0A2V5P9R5
MRLLDRYLLRELLLPLGYCLCGFLILMVFGDLFAELGEFQKKKLNAGDLLEYYFFLLGTPNFLGLVLPVALLLALLYSLTNHSRHHEITAIRAAGVSLWRLALPYLLVGVVLSLALFAVNELWAPRSTEQAERILNRRVQPQEPQADPGLLPASGLANAREGRTWLAGDYNRKTSQMNNPQVIWTLPDGSQRWLFASRAVRTNGVWTFFDVSECRASATNSLLAPSLQTNVLAMPEFKETPEQILSEINISKGMSLRARNKADIPLVQILDYLRLHPQPPDSIRPRLYTKLHGRLASPWTCLVVVLIAIPFGVASGRRNVFAGVASSIVICLVYFVLQMVGLALGTGDYVTPWLAAWFPNLSFGIAGLWMTATVR

>DME25_18755_UniProt_A0A2V5P0T2
PGEVHAVMGPNGSGKSTLAAILAGRDGYDVTSGQVLYNGQDLLEMDPEERAREGLFLAFQYPVEIPGVNSTYFLKSALNEIRKHQGQPELDAMEFLTVVKDKMKLLELNEDLLRRSVNEGFSGGEKKRNEIFQMAVLEPKLAVLDETDSGLDIDALKIVANGVNKLKRPDNAQLVITHYQRLLNYVIPDYVHVLVDGRIVRTGDKQLAMELEEKGYDWVSKHEVVTAA

>DME25_18765_UniProt_A0A2V5P0S1
MNPFDFLVLGSGIAGLSFALKVSAQGRVAIITKKNRAESNTNYAQGGIAAVTSREDSFEMHVRDTLEAGAGLCREEVVRAIVQEGPARIAELIE

>DME25_18775_UniProt_A0A2V5P4T1
MKWTMRNLIGSLGLLAWSVTLPNRAAADESKELAAFQLIKEGNRYLGEESKDKVVQIRSEKSIGSLTPNIWFIVYYDPDAAAKAAEVKFIAGKKAWVHRSPRILELGSRAHLPLNRQKMKVDSDKAIETATKEPVLKNLKVLATRLTLERWGEDSDAPAWKVRLWAAKLRNPSRDVDIGEVVISAEDGQVLKDDLHIDRVD

>DME25_18780_UniProt_A0A2V5P1V7
MSVPSDDQPLYDVIVIGGALAGASSAILLLRERPQLRVLIVEKSTAFTRRVGEATVEISAYFLGRVLGLTQYLNEAHLVKQGMRFWFCNQQVQSLEDCSEIGGSYLARVPAYQVDRSTLDEEVLRRAIALGAELLRPASVQRVDLHPGGAQSVSLRRDARSETLRARWIVHASGA

>DME25_18785_UniProt_A0A2V5P051
SVGVVFDQRQMDWPQTGSLGQRLKDFLLKHPAAREILEHAQWQEGDVHWRKQLPYSSRLYAGDGFALVGDAGAFLDPFYSPGLDWMAFTVTRSTELILAQFRGEA

>DME25_18790_UniProt_A0A2V5P0F0
WSLTKKNTLNLSIGVGYLAYFQHSELDRIFVTPGSELSFDVYVGDFWINLHDRFSLLQNAYQDPTVSGSGNYTLFQNSVGQTTVWDLDKVKINFGYDHANYVSLSGNTSPQNTTASDLFSASTAYAPRGGLSFGLELSGGLTQLTGTNAQDAIQWSVGSFLDTQLSQYIHFKGSLGYTVYELEQGGTPAVPLESSGFYGQLALSHNLNRFLSYSLSGGHSVTFAFLGGAVELSSVTLGATWNLLRKVTIGTTFAYENGKQIGFSSETFDRYGAAINLGRAFTAKLSGSVGYQFYLRESDLAGRGYTANIFSLNLTYTF

>DME25_18795_UniProt_A0A2V5P181
MKADSLPFFALAAALALARPPLAANAAPANPNSHFANIDQLIHQPVVSNTAPKAPSVVPKAASPQKPAPPQTAAAPAAAVPTPAAPTAVADTNATGPAPISLTGYVPDDKYKLRVGDKISLQILEDRDAPKGLLVADSGELDAPYVGRVAAADKTCRELAQELKSQLEKEYYYRATVIIAVDVFNKILGRIYVWGQVKQQGPVELLVNEDLTVGKAVLRAGGFGDFADEKHVQVIRPGGTNGAPAQSFTLNMVEILKKGKTDKDMVLQPGDSINVPSRIWNF

>DME25_18800_UniProt_A0A2V5P9Q1
MIMTPKLNVADATVYAEELSNFLGTQSELMRGEEVIRRAHARVTAQKPDLAFQPVALTVNVLPKTTIFVLRAIGDNPQYAQAFLQACMDEFVLLKKEMKTGLSDTMVASLMEEMLRKEKELAKCDEELVAFQSTNKMVITQETGNNAAT

>DME25_18805_UniProt_A0A2V5P9P1
QAIGLIETRGLVALVEGTDAMLKAANVELAGPLTQVGNALVTAVVVGDVAAVKAATDAGAQAIKAIKGDLVSVHVIPRPHGEVDAVLPKKPVAK

>DME25_18810_UniProt_A0A2V5P052
MFLARVEGSVVATKKDASMGGRKLLLLRPQLVDEKDPTKFRPGMNTIVAVDSVGAGIGELVLFCQGSSARLAPSLKDAPVDAVIIGIVDTVDVLGKEIYTAKQ

>DME25_18820_UniProt_A0A2V5P0R1
MLLARVEGNLTATRKHPSLEGWRLIICQPINQAGEPEGVPQVAIDAHGAAMHERIIISSDGMAARRAVKDEKSPVRWMIVGIVDELK

>DME25_18825_UniProt_A0A2V5P4S1
MRLGTVIGRVTLNQTVPALIGARWLIISAFSREHFQQGSQAPAGLSKEPSLVVYDDLGGAVGQTIGFVEGREAASPFEGPTPVDAISAALVDEIFYKPLS

>DME25_18830_UniProt_A0A2V5P1U7
MKPVVSVKDLEELLRSGKDVRALPTDALLTPSARDFLRDLEGNGSYKAPGSGDGGASTPAKPVTSKSSKSELEA

msu.edu Reference: BMC Caller: a webtool to identify and analyze bacterial microcompartment types in sequence data
Sutter M & Kerfeld CA; Biology Direct 17, 9 (2022)
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