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BMC type: PVM


Organism: Verrucomicrobiales bacterium. Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales.


   BMC-P    BMC-H/Hp    BMC-Ts/sp    BMC-Tdp    AldDh    PTAC    signature enzyme    AlcDh    regulator    others    no assignment

    DDW21_00425 (fasta)
                    DDW21_00430 (fasta)
                      DDW21_00435 (fasta)
                         DDW21_00440 (fasta)
                                              DDW21_00445 (fasta)
                                                         DDW21_00450 (fasta)
                                                          DDW21_00455 (fasta)
                                                             DDW21_00460 (fasta)
                                                                    DDW21_00465 (fasta) HMMreg00455_1_GRM5 PVM (HMM details)
                                                                           DDW21_00470 (fasta) HMMptac_2_mix PVM (HMM details)
                                                                             DDW21_00475 (fasta) H_purplishGrey PVM (HMM details)
                                                                               DDW21_00480 (fasta) H_vividBlue PVM (HMM details)
                                                                                           DDW21_00485 (fasta) HMMacetkin_1 PVM (HMM details)
                                                                                              DDW21_00490 (fasta) H_blurple PVM (HMM details)
                                                                                                 DDW21_00495 (fasta) P_dirtyPink PVM (HMM details)
                                                                                                  DDW21_00505 (fasta)
                                                                                                    DDW21_00510 (fasta)
                                                                                                        DDW21_00515 (fasta)
                                                                                                           DDW21_00520 (fasta)
                                                                                                              DDW21_00525 (fasta)
                                                                                                                    DDW21_00530 (fasta)
                                                                                                                       DDW21_00535 (fasta)
                                                                                                                              DDW21_00540 (fasta)
                                                                                                                                      DDW21_00545 (fasta)
                                                                                                                                                                DDW21_00550 (fasta)

BMC shell protein types:

BMC-H(map on tree)

       H_purplishGrey
       H_blurple
       H_vividBlue

BMC-P(map on tree)

       P_dirtyPink

(complete list of loci)

Protein sequences:

>DDW21_00425_UniProt_A0A352XIT4
MLFGEIKPEVLRKLLLPENKEKLRTLLLYHLVPGKVMAADLTSGNVKTTNAEKAKIAVSRGKIEIEGNKVFSLDVVSKNGILHTIGTVWIADSYEGFAGLDKKILEPAVVLGTATQQLQS

>DDW21_00430_UniProt_A0A352XIT5
MSFIPPSDYILTKLLGENPQTSIWLAEQVSVRRNVVLEELRNPQSSSREEFLAAVRAKASVDHPLIASVYEAINDDNTCFFTREWLPGDNLAQLMASGVVLKPAQVAHIIKRIAEACMHLEERGTATSLLSTKHIYLNEHNVLRLSNLAKAGNRSENASCFDIEALGQELPAIVEPGATGQTRLQMLMHWMTGANPEHILQWKDIRHYADQIEQQLATPIVPLQVSTRKSVKPVKKNSAFPWIIGAAAVLCIGLVMLVLKQQKDTPSIVTAEPLRAPILIPEGKYPTPDGGQGFVRKFWLSAYEVTIGEYREFIQALDAMDREQRILLDHESQPPGKVSHEPEDWYEIVAAAELEQVWQDRKLTLQVPMFQIDWWDAHAYCEWKRARLPTQEEWFAAMNYQTPQPTALKPGPWNEVQALDQNGSGFLGMAGGVCEWTRKPAKNPSNPLGAGQFVIIGASFENTANGAYAREWTNDRDVKRDDLGFRIGYDHQPE

>DDW21_00435_UniProt_A0A352XIT6
MNKAELIEAVQKAMGKEATKRAAEDAVNTVLDAIATGIKKTKKVQLIGFGTFTVKKRAARMGRNPKTGESMKIAASKSVGFKASSSLKGGL

>DDW21_00440_UniProt_A0A352XIT7
MNKHDPRLIQAVRSIESAAQGIPLRGDLEAELAIVERAQQRGWFTPDEDEMVLTRYSQYLSSPAALLISLEQLESTLRPNHVKWSDHLPAFTAAFTAACLMVRGS

>DDW21_00445_UniProt_A0A352XIT8
AHGQLISLKNEKSVFSTADVSGYADARGSFEDARPLKGFGNLPADHGRYLGYYKNGQLIVVESEVLGARILEAVTQSDGSIVRHWQIGPRKQALVVLLADEAGAVTAATDGASAESADGLKVALATDGKGMALQTATDAKSRLLLKIPAGDSVLRVQVAFARGSAAKTANLVDLKALTKGGKPQYEESLTSAGTVGTPEDGSSWAVDQISLPANNPWKSNLRFGGFDFLDENTAVLSTWNGDVWTVSGFQKDIKQLTWKRIASGLFETLGLKCVDGKIYVNGRDGITQLIDHNGDGEIDQFSAFNRDVLITKNFHEFAFDLQTDKAGNFYFCKASPVRGGGRGFDQIIPHHGIIGKISPDGKKFEVVATGLRAPGGLGVGPSGQITTGENEGTWQPCCKINYFTPAQAPAFLGTEPSRHELGKDLTFHEPLCYLPMDVDNSGGSQVWVPEGVDFGLKSGEMIHLSYGQSSLYRVLPSAAGDVMQGGVTKIPAKLQSSAMRARFHKDGSLFVLGFRGWQTNAPTECAFQRVRYVKDAPILIPQSQQITTKGVTLQFAVELDEELATDVTSYAVERWKYIRCEQYGSGEFSVDKPDTTAEENALKSESKNHRVHDKVEVLSAKLTKDGKGVEIEIKDMKPTMQLKVSYDLESTDGDVLIGNTVSTVKKL

>DDW21_00450_UniProt_A0A352XIT9
GSSFIIDLAKKRPVIWKKLDEPEQHFGLPRSTFSNLHKAATDRKRRQQFQLAIEFFQQHREEILSMREDPTIAPLIHILQEEEQQLSWQQQKIWRRRIFYRWFSFLSSHRSGYRRVMFHLFRWSGSAIAELRQPGVKPSGAPKRISPQQREELLALARPGDVFVTRHDDAMSNLFLPGFWPHAALHLGDRNELEQVIGKIPAPIKPRYKEQIRFLEAKKDGVRFRPAEETLHVDACLLLRPPLDVDSLRDALSRCLSHEGKKYDFLFDFRTTDRLACTEVIYRTYHGYSPVFFELIPKAGRVCIPAESLIDQALACGFTLVATCNVTPSSINKGEAAYADLALSRKQL

>DDW21_00455_UniProt_A0A352XIU0
MVPHHDQTNAPDGGLRFIMSLRITGEGHISSIEFRAGTMEHDG

>DDW21_00460_UniProt_A0A352XIU1
DPASRDMKRKLESIQWFAASNCGSPIETEAGWLVITHGVGPMRKYCISAALLDLHDPTIVIGRLAEPLLSPAGNERDGYVPNVVYSCGSRVHNGRLILPYAIGDRASAIVSMELSDLLEALLKSC

>DDW21_00465_UniProt_A0A352XIU2
MLPLERQQKILAQLNESGNLRTIEIAAFLNVTDETVRKDFEALEKRGYLIRVHGGATSPLKIREEISLTERQLTNRDEKTAIAREAAKRIQPNETIFLDASSTALTLTEFLPDYPLTILTNALNVFTALEGRSNLDLICTGGLYDARSRSYIGLIAEQSLRRFNIHRMFFSGSGLHLTRGISETNNRQAVFKERVVACAEDVVFLSDHTKLGQKAAFFFAQLSDISCIITDSQADQKILSDIASHGVEVIEA

>DDW21_00470_UniProt_A0A352XIU3
MSTSINSKTPRTVIEQLVREQIYAKMGLAAPQQAPNQLLVNISARHCHLTQEAVEAFFGPGYQLQPMKDLYQHGQYAAKESITLIGPRSRVISNLRILGPCRQLNQVELAYTDAIALGFDIPVRMSGDIVGTQGGMLMGPHGYFELKEGIIRAQPHVHMHPDDANFYGVKHLDVMKLKVHGDLGMTFDNLVVRVDPSFKLEVHIDTDEGNACGLKPNTFCELIK

>DDW21_00475_UniProt_A0A352XIU4
MSAALGFIETKGYVGSVEATDAMTKAANVELVKQIQTGGGFLTVIVKGDVGSVKSAVSAGADAAGRVGELVGSHVIARPHNDLLIQLGIA

>DDW21_00480_UniProt_A0A352XIU5
MAKQAIGILETKGFIALIEGADAALKSADIQMTGWDKIGSGLVTGFFTGNVAAVKAGLDAAAAAASNVGTVTSVQVIARPHDDLSKLGTWIG

>DDW21_00485_UniProt_A0A352XIU6
MLVLIANLGSTSFKYRLYRMDEGGQEVLAKGGYERVSDYAAVIDDALATLQKDGVISSAEEIDAVGFKTVLGKDLSGCVIADDVCVKALEDFAAVAPAHNPPYANGIRQFGKSLPHAKLVALFETAFYQWVSEARSIYALPKAWREIGIRRYGFHGASHKFVAERSAELLGRADVAQSTASLYLHGPAPIAGKPLRVVSCHLGGSSSITGIFNGVAIVTSMGFSPQSGLPQNNRVGDLDSGALPYAMKTLGISLEEAERQLTKESGLQGISGISNDIRDIHAAKNQGNADAALALAHLVDSIRHWVGSFAWQMGGIDALVFTAGIGENDYTVRKAVCEGLEEFGLVFDDVRNVACRAVEAELSAPHSKAKIFVIPANEELVLAREVFRKVTHHEIS

>DDW21_00490_UniProt_A0A352XIU7
MAKQAVGLLETRGLACLVVGVDAMLKSANVELAGPMKQVGSALCNAVITGDVAAVKSAIDTGAAAASSCGEVVSAHVIARPDDAIEGVLPKDASAAARAPRK

>DDW21_00495_UniProt_A0A352XIU8
MFLAEVIGQVVATKKDEHLTGRKLLVLRPKLVDDKDSTQFKNGQNTIIAIDTVGAGEGELVLFCQGGSARQAADLKLVPVDAVVIAIVDRVEVLGNTVYKNS

>DDW21_00505_UniProt_A0A352XIU9
MTLDQKQIQSVVESVLSRLVAANVTAAPTSAAAAGCGCGCGGGEGNYGVFTCVDKAADAA

>DDW21_00510_UniProt_A0A352XIV0
CGKVARASAMVAASILGMLQPAHPAAESLQTATVDLTVLNNSGEFPAADLADQSKLMKFSLRAQY

>DDW21_00515_UniProt_A0A352XIV1
MIDKVATLCQHDPMQLFYHGTVLCKVAFAIIITSTFLVSCGPDLNAIPEATPKMAMEMGTTQHQLQNGRSIYMAHCNKCHERVPPAKIDPEAWREVLPHMSQNAHLNSTQLADLQIYLIAAHGTVYQLDLEH

>DDW21_00520_UniProt_A0A352XIV2
MKKLFFTLPLLILCHCAVTDNEQGGISEVPNPSPEMAQKSGKSLEQLQRGHVVYMLHCAECHTYPLPHDLDEVDFVDSVPKMVKHSGLNPSDGNDVLAYILAVKNM

>DDW21_00525_UniProt_A0A352XIV3
MHTTGFQLFFSFALLSVLLPACTPQTLDQKTPVATAEMANRSKQSLDTLQTGRALYIAHCGRCHEHQLPASVSSEDWHIVAPGMAWNAGLNQGDERAVLAYLLAATSH

>DDW21_00530_UniProt_A0A352XIV4
MDSFLELALFSLIMALGQFSPGPDMLLLTRSSLHHGARAGSSTALGIATGLALHSAIALSGGVFLLQQAAPMITLITKILATCYLFYLAWMILQASTSLSTSANPAPARSHFLRGLTCNLLNPKVALILASVCTPFLHKNASPLRPWLLASIIVVQGAALWILWAHLLQHNRLKTFYEQHQDRISQGFAAFLALLSVLLWKP

>DDW21_00535_UniProt_A0A352XIV5
MTNPTNVLAQGIEIIGSVRFSNDMIIDGKIEGQIMSDKGRVTIGENATIKGDITAGEVKVFGKVEGKITSDRCELKAKSRLDGDIKAKMFAMEEGAQLAGRTEIG

>DDW21_00540_UniProt_A0A352XIV6
MEIRPVGIVRSCYEEKFAVPRQPGLCPSAWARVECEEEFGNEDFFRGMEGFSHVWLIFGFHETLEQGYAPTVRPPRLGGNERVGVFASRSTFRPNGLGLSLCRMEGLERKEGKMLVHLGGADLIDGTPVYDIKPYLAYAESISDASCGYAADAPERKEVQILSECARAFAKLSERDQSIVKEALALDPRPAAHVDSERIYGARLCGVNVRFRVGKVVEVVEILTKRGKD

>DDW21_00545_UniProt_A0A352XIV7
MRPFPAHFAIACNPKFNQTKSPSHFKNSPHIPLPSHQKSLSIYHVTAKIEYCHRNSESLHYPNRTTHMKNHNIRRTKGFTLVELLIVISIIMVLAALGFAGVQAAMKRSKTVQTQNLVTNLALAVNNYFDEYGSLPITNPSDTPLNTQDVAGTDLLTVLIGKEQQSSTQLNTRNIKFLEAKQAIGRKPGIVYSQNNTVSAMNDAFGEAIYIVFDSDYDEEIRNPIKQGADPDIVRGARAVVYSHGADRLPATKDDVKSW

>DDW21_00550_UniProt_A0A352XIV8
MQVFFCISKDRTHPVRNDLCLKTNFSSPKNPRPLSHRSCFCVTAFLAVVSAISPLLAAEKITYDDHVFPIFEQACLNCHNPDKAKGGLDLSSFSNTMKGGSGGKIAEPGDTSSSLLESVMRTGELTMPPEGDPISPAHIATLKAWIEGGLLENKNSAARKPSKPQFNTSMSSAPGAKPEGPPPLPLHVLLEPLVAAPRGAAIHAIAAAPWAPMIAVTSLRQICLYHSDSLELIGILPFPEGEPTSLAFTPDSRYLIVGGGIAGKSGTTVTFDVTTGARILTAAKEFDSVLCADIRPGFDVVATGSPSKLVKLWNTQTTELQKSIKKHTDWVTSLDISPDGILLATGDRNGGVLVWEADTGGEFHALRAHQAAITHTAYRNDSNILGSSSEDGTVRMWEMNGGTEIKKIDAHGGGVIGFDWTRDGHFVTAGRDLKAKIWKPDFNPLRDFAAVPALPTAIAVDAEGKRAFVGDINGLVHVFQCDNGALIATLQNNPPTIATRITQLDQALAAHPESITVAQKTTTDAAAKLEEHKKIIAAATTAAQQSKDAVGPLLQQENEIKAKLEASRQALAAKKTEAETLRPSHAPALALVEQSRTALATAQGAGDGAAIATTQAALTDAEGKLNQITQSLAALDATVATLAKEEQDLNNALAPSTKAVADAQAKVAPAEADLKGKQDALAALEKNHVDAQAHLQAKQTEPLRLKQAHNHWTAAAINAKALAESAIASTLHQEFEHQTTSFTDAAKRIDGAAAELNALRQALAELTKKIHDAQSVTTPDPTIIKLMEVDIKTKQQSLSSASSALQKAEAEMIEMRQTIEQKTPERHTKLILSSQLKADYLRQLEQKIE

msu.edu Reference: BMC Caller: a webtool to identify and analyze bacterial microcompartment types in sequence data
Sutter M & Kerfeld CA; Biology Direct 17, 9 (2022)
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