BMC type: GRM1A


Organism: Clostridium ljungdahlii (strain ATCC 55383 / DSM 13528 / PETC). Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae;


   BMC-P    BMC-H/Hp    BMC-Ts/sp    BMC-Tdp    AldDh    PTAC    signature enzyme    AlcDh    regulator    others    no assignment

       CLJU_c39660 (fasta)
              CLJU_c39670 (fasta) HMM00465alcdh_3_mix GRM1A (HMM details)
                     CLJU_c39680 (fasta) HMM10114PocR_2_grm GRM1A (HMM details)
                          CLJU_c39690 (fasta) HMMreg00072_5_grm1 GRM1A (HMM details)
                           CLJU_c39700 (fasta) H_fuchsia GRM1A (HMM details)
                            CLJU_c39710 (fasta) H_fuchsia GRM1A (HMM details)
                                CLJU_c39720 (fasta) HMMptac_1_mix GRM1A (HMM details)
                                          CLJU_c39730 (fasta) HMMalddh_2_egra EUT2D (HMM details)
                                              CLJU_c39740 (fasta) H_bubblegum GRM1A (HMM details)
                                                  CLJU_c39750 (fasta) HMM06249EutQ_3_grm1 GRM1A (HMM details)
                                                     CLJU_c39760 (fasta) Ts_burgundy GRM1A (HMM details)
                                                             CLJU_c39770 (fasta) HMMPduS_1_all GRM1A (HMM details)
                                                              CLJU_c39780 (fasta) P_paleCyan GRM1A (HMM details)
                                                               CLJU_c39790 (fasta) Hp_grpu_fadedOrange GRM1A (HMM details)
                                                                    CLJU_c39800 (fasta) HMM06723EutJMreB_1_grm GRM1A (HMM details)
                                                                         CLJU_c39810 (fasta) HMM01923cobtr_3_eut2 GRM1A (HMM details)
                                                                               CLJU_c39820 (fasta) HMMgreae_1_grms GRM1B (HMM details)
                                                                                               CLJU_c39830 (fasta) HMMgre_1_grms GRM1B (HMM details)
                                                                                                        CLJU_c39840 (fasta) HMMalddh_2_egra GRM1B (HMM details)
                                                                                                         CLJU_c39850 (fasta) Ts_dust GRM1B (HMM details)
                                                                                                          CLJU_c39860 (fasta) H_sky GRM1A (HMM details)
                                                                                                           CLJU_c39870 (fasta)
                                                                                                                  CLJU_c39880 (fasta)
                                                                                                                   CLJU_c39890 (fasta)
                                                                                                                          CLJU_c39900 (fasta)
                                                                                                                                   CLJU_c39910 (fasta) HMMreg00392_2_grm2 SPU1 (HMM details)
                                                                                                                                      CLJU_c39920 (fasta)
                                                                                                                                             CLJU_c39930 (fasta)
                                                                                                                                                CLJU_c39940 (fasta)
                                                                                                                                                       CLJU_c39950 (fasta) HMM00465alcdh_3_mix PDU1D (HMM details)
                                                                                                                                                          CLJU_c39960 (fasta)

BMC shell protein types:

BMC-H(map on tree)

      2x H_fuchsia
       H_sky
       H_bubblegum

BMC-Hp(map on tree)

       Hp_grpu_fadedOrange

BMC-P(map on tree)

       P_paleCyan

BMC-Ts(map on tree)

       Ts_burgundy
       Ts_dust

(complete list of loci)

Protein sequences:

>CLJU_c39660_UniProt_D8GIB6
MCGGLFMKMEELVQKKLCLAFNDDSIMFDKSRFAGGLTNYNYIMNINGKQYVVRQPGAMTNLMIDRKIESFNDKIAAELGLNSECIYFDEDSGIKISVYIENSKNIAQVDPCSPITLRSVSDLMKKTHSSKKCFSNSFNWRMELNKYEHIIQKLNGDFFFDYATLKKQLLDFMEKNIKKTISVPCHNDTVPENFIVDSNGKTYLIDWEYSGMNDPSWDVASYILESKLTEEAIQYLLVDYYGQLPTPEEIVKIKSYMVAQDLLWMVWAMIRHYSGDDFLDYCCFRYERFQRNVKAITSSPSYSIADMVKNC

>CLJU_c39670_UniProt_D8GIB7
MEDKFENFNLKSKIYFNRESIQLLEQVTGSRAFIVADAIMGKLGYLQKVIDYLSKAGISSVVFTGVHPDPDVNVIADAMKLYKKSDADVLVALGGGSSIDTAKGIMYFACNLGKAMGQEMKKPLFIAIPSTSGTGSEVTNFTVITSQKEKVCIIDDFIAPDVAILDSSCIDGLPQRIVADTGIDVLVHSIEAYVSKKATDFTDALAEKAVKLIFENLPKIYNDSKDSEARDHVQNASCIAGIAFTNAGLGINHSLAHAMGGSFHIPHGRSNALLLNAVMEYNASLVGNASEHAMEKYAKLASILHLPARTTREGAVSFIEAVDKLIKSLGVEDNIRSLGIKEDEFQSALNHMAETAMQDRCTPTNPRKPSKEELIHIYQKCY

>CLJU_c39680_UniProt_D8GIB8
MNKTDNPLKKFITSKLYSRYSGILSLSDVPLFLVDTNGDILLEFIPSPDFCTHVCQERESHVCPDYQCRLQSGKEGRFVCRYGLENMIFPIIVDNKTVGYMAGIQVYLKDNEYKKYMIDVQSHKDTKTEELEFIAKSIFSLKSVESNKIKVYERLCCEIAKNISLDLSESTKLSHQDVKRLSIEKEILEKKIIDLESKNMSLVVNPHFLFNTLNCIARVAYFEHSHETEELIYCLSDLLRYNLKQGNQLHTIGAEINNIEKYLYIQKVRFKTRLEYDINISEDLKSYRILNMIIQPIVENSVIHGITPRRDGGKISIYAEKYKDEIVISIMDNGNGFPKDVLLDIQQCKNKSGLGFQSTDKRLKRYYGEQYGLKILKSDYSGSTVTITIPAEPIVR

>CLJU_c39690_UniProt_D8GIB9
MSIVLIVEDEILEQEFLKSIVLEELFPEDVLLTCESGVQAIKLAKQYKPNIIMMDVMIPELDGLSTIEEIRKFLPNVLITILSAHSDFSYAQKAISLRVFEYLLKPVKPNIIKQVFRKMLDSAADCNIVLDKSSEEKNPESKESQQYFIEKSIKYIKEHFREKITLQIVASTVFLNPKYFSRVFKKELGVSFSKYVINLRIQYACRLLKTTNYRAYRISSEYGFSDPSYFNRVFCAEMNMTPQAYRKHALMSMEDD

>CLJU_c39700_UniProt_D8GIC0
MKYDALGMIETKGLVGSIEAADAMVKAANVYLIGKEHVGGGLVTVMVRGDVGAVKAATDAGAAAAQRVGELVSVHVIPRPHVEVETILPKTNLKEDEK

>CLJU_c39710_UniProt_D8GIC1
MKSDALGMIETKGLVGSIEAADAMVKAANVNLIGKEHVGGGLVTVMVRGDVGAVKAATDAGAAAAQRVGELVSVHVIPRPHVEVETILPKTGLKED

>CLJU_c39720_UniProt_D8GIC2
MDKYEAVIKLLLEAVQGSQSSTETKQDTNEIPVGVSNRHIHLSQADFNILFGEGYQVTKIKDLAQPGQYACKETVTVCGPKGAIEKIRILGPLRSKTQVEILRGDSFKLGVAPEVRMSGDLHGTPGIAIIGPKGSVQIKEGVIVAQRHIHMTPADAQHFGVHDGQTVSIKVDGPRGGIYNNVAIRANDTSALECHIDTEEANAMCVGNSSKITIVK

>CLJU_c39730_UniProt_D8GIC3
MENFDKDLRSIQEARDLARLGKIAADQIADYTEEQIDKILCNMVRVAEENAVCLGKMAAEETGFGKAEDKAYKNHMAATTVYNYIKDMKTIGVIKEDKSEGVIEFAEPVGLLMGIVPSTNPTSTVIYKSIIAIKSRNAIVFSPHPAALKCSTKAIELMRDAAVAAGAPANVIGGIVTPSIQATNELMKAKEVAMIIATGGPGMVKAAYSSGTPAIGVGAGNSPSYIERTADVHQSVKDIIASKSFDYGTICASEQSVIAEECNHDEIVAEFKKQGGYFMTAEETAKVCSVLFKPGTHSMSAKFVGRAPQVIAEAAGFTVPEGTKVLIGEQGGVGNGYPLSYEKLTTVLAFYTVKDWHEACELSIRLLQNGLGHTMNIHTNDRDLVMKFAKKPASRILVNTGGSQGGTGASTGLAPAFTLGCGTWGGSSVSENVTPLHLINIKRVAYGLKDCTTLAADDTTFNHPELCGSKNDLGFCATSPAEFAAKSNCDSTAADTTDNDKLARLVSELVAAMKGAN

>CLJU_c39740_UniProt_D8GIC4
MQALGLIETIGLIAAIESADAMLKAADVNLLEKTYVGGGLVSIAVTGDVGAVKAAVDAGGAAVRNINDTLLVSQHVIPRPHEELDNIIVSAVPLKDRNIPTVAPAKNQPEDETTVEVIEEDTVEVPVKIEDSIVEDSIEENSTVEDPAVEDSKEENSTVENSENEELLPEKITDPLKMDLTKLNRKAVDKMVLDYGLEKAIEILSKFKVIELRNLARKYKNFGIKGRSISKADKKLLLIEFKKYYGHN

>CLJU_c39750_UniProt_D8GIC5
MKKLICVKDVETAEKQGQKVVYINCDTIVTPSAKDAARNSGIEFSTETPVPEVKKSCEVEVPCEVKGSCETKASELEKVFENGIDSEVIYKVFKVMMEKGLLNGVIDLITNKKPYLAETDAIGLKIVRGSSVKYEALDTGNPDDKVFYQEIINADDGSSMNAGFITIEDCKFDWETECQELYYVIEGTLTVTVDNKVYTAHPGDSVFFPKGAKIAFGSPDKMKAFYATY

>CLJU_c39760_UniProt_D8GIC6
MSQAIGMVEFTSIARGIYAADQMVKTSEVEIVTAGSSCPGKYIAIVQGDVAAVEDSVSVGVRFAEEFLVDSIVIPNVNPAVFPAITGATMPDEVQALGIMESFSLSTMVIAADAILKSAELQPIELRLGNGLGGKSFFTFTGDVAAVETGVETGKAIAEEKGLLVNAEVIPSPSERLLASLF

>CLJU_c39770_UniProt_D8GIC7
MSILDMVREAGVIGAGGAGFPTHAKLASKAEYILLNGAECEPLLRVDQQLMRMFPDEIIKGFESAGKLVGANKALIGIKGKHKEVISILRNRIEELQVGDFIEVKEIPDIYPAGDEQVLVHELTGRVVPEMGIPISVGCVVVNAETALNIYHASMGVPVTEKYITVAGDIPKRLTVKVPVGTPVIDVLKLSGIENFDDYTVIDGGPMMGPVKSDVDGYVTKKNKGFVILKKDHPLIRKKSVSIEQAKRVNRSSCEQCRMCTDMCPRYLLGHSTQPHKMMRALNYALKNVEEQKIAQLCCQCNLCELFSCPAGLYPKSANLYFKGKLAEQNIKYKPMKSEFTTRKSREYRLVPSKRLIARLGLHDFDRPAPMTEVQVNPEEVHIATRQHVGAPAVPIVNVGDHVELGQQIGKIPEGSLSAAIHASISGTVVECGNDFIVIRRG

>CLJU_c39780_UniProt_D8GIC8
MLIARLIDNVWATRKAESLNGLKFMLAEVIGGTGAGQHLVVADIISAGIGDRVLVSTGSSARKMLDECEDIPVDAVVVGIIDEDCNVE

>CLJU_c39790_UniProt_D8GIC9
MEFRTIKSPSKGTIDMLMRRMGANVNKDSICVDAVGLVQGKMLDMIYAADIAEKAVGVTVEDIKGSCPQNMIMIAIFGDTSSVESAIQEIKRNVKKEKDIC

>CLJU_c39800_UniProt_D8GID0
MSEKNLTFKFCDQLVKDFEHVVKHPIVGKSSVYYTGVDLGTACVVLAVVDENYKPVAGAYKYADVVRDGMVVDYIGAINIVREMKHEIEEKLGTELIYGAAAIPPGTDDLDSGAVKNVVQAAGFELTSVLDEPTAANKVLRIKNGAVVDIGGGTTGISILKDGKVVYIADEPTGGTQFSLVVSGAYKMPFAEAELYKRNPENHKDLLPVLKPVVEKIASIINQHIKGYDVQEISLVGGTCCLTGIETIIEKKTGIFTHKPKNPMFVTPLGIALSCTQESI

>CLJU_c39810_UniProt_D8GID1
MKFITEIDLRDLYRKEPFTDYELEPGTRLTPGARQFLSDKGINMFDDGPYTKRNTANKKQTVEKKQTVEKKQAVEKKETVEKVQIKDENQTPAQPKKKNNWKKKKLYSKMKSTEALFLITEEELLNKDILWAQNVISLGKQFTKIKNAIQGKGSVENLCIKECTAINFSNYSLDLDDCFEITEFHMQLKKGRDIIILHRLRCALREIEPFILEAYEDSEDEDALCSDTIGKINQIINALSQMICSIFGGTKCQRKI

>CLJU_c39820_UniProt_D8GID2
MSNAKAAMIERKAVIFNVQKYNMYDGPGVRTLVFFKGCPLRCKWCANPEGQLRKYEVMFKKNSCINCGACVSVCPVGIHTMSKGMEHEVDHSIDCLGCRKCENACTESAISIMGQEKTVSEIMEIIEEDRQFYEISGGGVTLGGGEVLMQWEFAANLLMVCKQEGINTAIETCGHAKLEAILKVAEFTDLFLFDIKHIDPERHYQLTGVHNEQILKNLKELLNHRYNVKIRMPLLKGLNDSKEEFDGVINFLMPFRDYKNFKGIDLLPYHKLGVNKYTQLGIEYPIEGDPSLSSDDLDRIEGWIKEYDFPVSVIKH

>CLJU_c39830_UniProt_D8GID3
MDIREFSNKFAEATKNMSAEEQAALMKIFQGVSQEITKEDNGAPAVSAEPCTNNGEVPNGMTERLKRIKENYLKQKPSITTYRAKAITKIAKENPGMPKILLRAKCFRYCCETAPLVIQDDELIVGAPCGAPRAGAFSPDIAWRWMQDEIDTIGTRPQDPFYVSEEDKKVMREELFPFWQGKSVDEYCEDQYREAGVWELSGESFVSDCSYHATNGGGDSNPGYDVILMKKGMADIQQEAKDHLAKLDYENPEDIEKIYFYKSVIDTTEGVMIYAKRMSEYAAELAAKETNPKRKAELQKISEVNAHVPAHKPSNFWEAIQSVWTIESLLVVEENQTGMSIGRVDQYMYPFYKADIESGRMNNYEAFELAGCMLIKMSEMMWVTSEGASKFFAGYQPFVNMCVGGVTRDGLDATNDLTYLLMDAVRHVKIYQPSLACRIHNKSPKKYLKKIVDVVRAGMGFPACHFDDAHIKMMLAKGVSIEDARDYCIMGCVEPQKAGRLYQWTSTAYTQWPICIELVLNHGVPLWYGKQVCPDMGDLNRFKTYEEFDAAVKEEIKYITKWTDVATVISQRVHRDLAPKPLMSIMYEGCMEHGKDVSAGGAMYNFGPGVVWTGLATYADSMAAIKKVVFDDKKCTLEQLNQALKADFVGYEELRNDCLKAPKYGNDDDYADLIAADLINFTEMEHRKYKTLYSVLSHGTLSISNNTPFGQLTGASANGRKAWTPLSDGISPTQGADFKGPTAIIKSVSKMSCDNMNIGMVHNFKLMAGLLETPEGEEGIITLLRTACLFGNGQMQFNYLDNKTLIEAQKHPEQYRDLIVRVAGYSAFFVELCKDVQDEIISRTMLTHF

>CLJU_c39840_UniProt_D8GID4
MNIIDNDLLSIQESRILVENAARAQKMLATFPQEKLDEIVERMAEEIGKHTRELAVMSQDETGYGKWQDKCIKNRFACEYLPAKLRGMRCVGIINENGQDKTMDVGVPMGVIIALCPATSPVSTTIYKALIAIKSGNAIIFSPHPRAKETICKALDIMIRAAEGYGLPEGALAYLHTVTPSGTIELMNHIATSLIMNTGVPGMLKAAYNSGKPVIYGGTGNGPAFIERTADIKQAVKDIIASKTFDNGIVPSAEQSIVVDSCVASDVKRELQNNGAYFMTEEEAQKLGSLFFRSDGSMDSEMVGKSAQRLAKKAGFSIPESSTVLISEQKYVSQDNPYSKEKLCPVLAYYIEDDWMHACEKCIELLLSERHGHTLVIHSKDEDVIRQFALKKPVGRILVNTPASFGSMGATSNLFPALTLGSGSAGKGITSDNVSPMNLIYVRKVGYGVRNVEEIVNTNGLFTEEKSDLNGMTKKSDYNPEDIQMLQHILKKAMEKIK

>CLJU_c39850_UniProt_D8GID5
MSKYVALGLVETFGLVFVLEAADAMCKAADVELIGYENVASGYISVLVAGDVGACKAAVEAGVKAVKDMGTEVYSSVVIASPHPDLQKITKRYTIENLLP

>CLJU_c39860_UniProt_D8GID6
MRYYGEEALGLIETLGMVPAIEAADKMLKAADVELISYENIGSTLVTIMVKGDVAAVRASVEAGAAAAAAIGKLTAHNVMPRPIKGVGDIVSVHDIDA

>CLJU_c39870_UniProt_D8GID7
MKPLNYAILKHFTTVKEACAEDVIEALKGDYGNFRALNKDAVIEALMTAEANGLLEETRFDEDKSGNLRVYYHANEEGAATINKYIKD

>CLJU_c39880_UniProt_D8GID8
MSEMTGAVSASAIAAKKKLSSQFFKKGISIAIFSGIMYGFYSAFLSLGMTKGVWGDWYGANKAGLSAFVITYVLGALGSAVNDSCSAIWAMLYAGIKGKFGDFLRCINTTPGRVMILAALIGGPISSTAYVIGLQMAGSIVIPITALCPAIGAILGRILFKQELNKRMMLGIVICVAASFMIGSTSITGSAPKGALLGIAIAFIAALGWGFEGCVAGFGTSMIDSEIGITIRQATSGISNLIILIPIMGMLAGSVKLSTGLVFQAFTSGSAMIWFSMSGLCAFVSYMSWYKGNSMCGAALGMACNGTYSFWGPFCCWIVLGVIFGKSGWSIPAIGWIAAVLMVLGILVISMNPLDLFRKKED

>CLJU_c39890_UniProt_D8GID9
MKPLNYAILKHFTKTKEACADDVIEALKGDYGDFKGLKKGAVIEALMTAEANGLLEETRSILDKSGDLVVYYHANEEGAATINKYID

>CLJU_c39900_UniProt_D8GIE0
MELSMDAALAAAKKKVKSSFFKKGIAIGLFSGISYGLYSAFLTLATTKGVWSDWYGANTAGLTALTIAYVLGALSSGINDTASAVWALIAAAGRGKLGDFFRCLNSKPGRLIMVAALMGGPVATTAYVVALKMAGSLAVPISALCPAIGAILGRVLYKQELNKHMIVGILICVCASGLIGLQSVTGNAPAGAGLGMVIALIAALGWGLEGCIAGYGSCMVDSEIGIAIRQTTSGLSNLIIFIPIISVIVGNNAGLAFHLTAKAFTSGPAMIWLAISGLCAYLSFMTWYKGNSMTGTALGMATNGTYSFFGPFFCWIILGVIFGISGWSMAPIVWFSAILMAVGIFVIAVNPIDLFRKQED

>CLJU_c39910_UniProt_D8GIE1
MLNIDWKPDKKSCISMYRQIVNYIKEKIGNGEWTVGEKLPSQRELAEKFEVNRSTIVEALDELKADGLIEGKSKKGTRIINNTWSLMASMLPGSWEPYIKSGIHKPNLHTIQIINKMEYKDNIIRLGTGELSPELFPKDMMKKVFKTVSNNITSLSYEMAKGSLKLRKVISKYLKKFHINVSPDSILIVSGSLQALQLISMSILKPGSKILVEKPSYIKSLHVFDFSGVSFSGISMDADGIKLNEILKNIDRNTSLLYTIPTFHNPTGILMPQYRRNKLLDLCNKERIPIIEDDAYRELWLDEIPPYPIKAKDENGIVLYMGTTSKSMAAGIRIGWVVAPETVVERLGDVKMQTDYGASSISQYVTAEWIESGFYEIYLKELREKLKIRREIALNVLEKYFFNMASWNVPKGGFYIWLKLKNKIDMKKLFYKCCKNGILINPGYIYDFTKNYNIRISYSYASLYDLELGLKKLSQIIRSLSDSCYC

>CLJU_c39920_UniProt_D8GIE2
MIRYFLQGFLLGISYVAPIGMQNLYVINSAITASKRAEAFRTAFITIFFDISLALTCFWGVGTIIQKSKVLRSVVLLVGCIVVIYIGISLIRSKPDIDEKTNIEKNLVKVIISCFVVTWMNPQAIIDGSLLLGGFRASLSYQSSWYFILGSCMASIFWFTSLAAIMSIFKHSFNEKSIKVINRICGIIIIYYGVRLGFNFILSK

>CLJU_c39930_UniProt_D8GIE3
MENISTKNNEMLSVIMLSLVLALRQMAMTIVSPFISVYSKSLLYNTPLLAGLALGIFGLTQAIFQIPFGALSDKYGNKIMMLIGILQVDIGLVVAFLAKNIYVFIFARALQGSGAILGVGYSWVSSMVTKDKEIKALSILGAFVSCAAALSFALGPIIHNFLPVNKMFLICALLIFVNWLYILLFLEDSKNYTNKIKNSFKENFKILVKNKTFIILNKAAFCNNFMMMAVFYVLPIYLSNVTGINGMWRIFIPSIIIAIIFMKKAIRYMKKYGSNIILAAAFTVSSLSIFFYFQKTSYIFLLLGTIFFFCGYMCLTTILATNVNNIVKDDLRGTANGIFNSFQYIGSFAGSIAAGALWGFSQRITLILTIFIGLGGIFTIIFSKSNIKEEGKL

>CLJU_c39940_UniProt_D8GIE4
MKDKILDTAANKIQMHGLKKFTIDEIAKDLKISKKTIYKYFNSKDAIVEEFFKTVVESDKKNMENSLSHQNDFISKIHSIIYSNHKYKIPINLINEAKIYYPKEWGKIQELKQYKLGAIKKLLEEGVSSGVIRQDINLPILIKMLEQTADTFLDYNFLMDNKMKFSEAIQEVLKIILYGISIK

>CLJU_c39950_UniProt_D8GIE5
MERFTLPRDIYFGEDALGALKTLKGKKAVVVVGGGSMKRFGFLDKVEEYLKEANIEVKLIEGVEPDPSVETVMKGAKIMTEFGPDWIVAIGGGSPIDAAKAMWLFYEYPDFTFKQAIVPFGLPELRQKAKFVAIASTSGTATEVTSFSVITDYKAKIKYPLADFNLTPDIAIVDPALAQTMPPKLTAHTGMDALTHALEAYVASARSDISDPLAIHSIIMTRDNLLKSYKGDKDARNKMHISQCLAGMAFSNALLGITHSLAHKTGAVWHIPHGCANAIYLPYVLDFNKKACSDRYANIAKILGLKGTTEDELVDSLVKMVQDMDKELNIPLTLKDYGISKDDFNSNVDFIAKNALLDACTGANPRPIDFDQMKKILQCIYDGKKVTF

>CLJU_c39960_UniProt_D8GIE6
MQYVIGLFNHYGYIVLLIALMLELIAFPLPGEALMTYCGYVIYKGKMSLILSILIASLGVSIGVTLSYFIGRILGSAFFEKHGHYIHMNKNKFDKVSLWLKKYGNKLLIIAYFIPGVRHVTGYVSGIADMSYKRFSVNAYIGALIWTTTFISLGSVLGVNWVKYHHLLEGICL