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BMC type: CsomeACh


Organism: Thiobacillus denitrificans (strain ATCC 25259). Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales;


   BMC-P    BMC-H/Hp    BMC-Ts/sp    BMC-Tdp    AldDh    PTAC    signature enzyme    AlcDh    regulator    others    no assignment

                 Tbd_2634 (fasta) HMMreg00486_1_mix GRM1B (HMM details)
                        Tbd_2635 (fasta)
                                      Tbd_2636 (fasta)
                                           Tbd_2637 (fasta)
                                                   Tbd_2638 (fasta) HMMrbcL_1_Csome CsomeACh (HMM details)
                                                        Tbd_2639 (fasta) HMMreg00126_1_mix CsomeACh (HMM details)
                                                                     Tbd_2640 (fasta)
                                                                         Tbd_2641 (fasta)
                                                                          Tbd_2642 (fasta)
                                                                            Tbd_2643 (fasta)
                                                                              Tbd_2644 (fasta) H_hotpink CsomeACh (HMM details)
                                                                               Tbd_2645 (fasta) H_hotpink CsomeACh (HMM details)
                                                                                Tbd_2646 (fasta) H_hotpink CsomeACh (HMM details)
                                                                                  Tbd_2647 (fasta) P_neonPurple CsomeACh (HMM details)
                                                                                   Tbd_2648 (fasta) P_neonPurple CsomeACh (HMM details)
                                                                                             Tbd_2649 (fasta) HMMca_1_CsomeACh CsomeACh (HMM details)
                                                                                                         Tbd_2650 (fasta) HMMcsoS2_2_ACh CsomeACh (HMM details)
                                                                                                               Tbd_2651 (fasta) HMMreg00126_1_mix CsomeACh (HMM details)
                                                                                                                 Tbd_2652 (fasta)
                                                                                                                                     Tbd_2653 (fasta)
                                                                                                                                         Tbd_2654 (fasta)
                                                                                                                                                   Tbd_2655 (fasta)
                                                                                                                                                            Tbd_2656 (fasta)
                                                                                                                                                              Tbd_2657 (fasta)
                                                                                                                                                                Tbd_2658 (fasta)

BMC shell protein types:

BMC-H(map on tree)

      3x H_hotpink

BMC-P(map on tree)

      2x P_neonPurple

(complete list of loci)

Protein sequences:

>Tbd_2634_UniProt_Q3SFL9
MTAPPVDAVRALECALSLCRQELAESRGRAQGLALAEAVFTHAANPLAVLDRHYDFLRVNDAYARCCGKPVEAFAGRNHFEMFPSDARLVFDDVVQNKPASTTFTRALIFPDQPERGVSYWDWTLVPVLDADGEVDALVLSQVDVTEREAGADALRQSEARYRRQAAELELIYRTAPVGLCVLDTQLRYVHINEHLAEFDRLPVEEHLGKTIRETLPDTAARVEPLLRRVLETGEPVLDLEGRGETEPGVWRHWNSQYWPLKSADGRVYGINVVVEEITERRRLEETRQREQAFRSLAENSSDIISRFDRELRRIYVNPAIEAILDRPRETLIGKTHHDLGLPEALAAALDRPLAMVFETAQPLAAEAVVPTPKGERYLEARIVPEFDASGAVETVLAITRDLTERKRAEEALQASERKYRALVENLYEGVWLLDTEADTTFVNARLAELLGYPATEMLGRSVFSFMDPEQVEAMRGNLLRSAAGTRAEYDFEFRCKSGEPIWTRVAATPIVDEGGRYQGTLIALIDITERIRSAEALHRREQEFAALVERSPDIIARVDASLRLRYVNPAIERLTGRPRDWFIGKTPGERELSPEEARLREATLRAVFESGEERIVEQRNPSLNGERIFQTRLVPEFGPAGKVESVLVVERDIDDLKRAQEALEELTLLDPLTGVANRRFLERFVGREWMREARQRLPIAAVMVDIDHFKDYNDHYGHAQGDACLRTVSQTLRGALHRPADILVRYGGEEFIVLLPESDLAAAREIAERLRQAVEALALPHPTSPIGDRVTISLGVAAVQAHEGEFDQLLIAADAALYRAKKKGRNRVEASGAPAADAARPP

>Tbd_2635_UniProt_Q3SFL8
MLAGFFRFLGQGLLHQCRKGDEVLPGVRVLHAGVLKELGDPAGVELVARRLLQVFSRGGFDVLAQFHRGFLFSTKRPAPLGRVRPHPDSDPPAGLPFHPSNSVSGLRAGGRRIARCLIIPSGPLQLSGQRGRCARRTSRHGAGRSRPVFQSDQFRSSKISDTNPPLPAAPKPRTLSAGVVAVRREAGGWRLLVLRAYRNWDFPKGVVEAGEPPHDAAIRETAEETGIDDLVFAWGDDFRETAPYGQGKIARYYLAETQQTQITLPVSPELGRPEHDEWRWVDFDTAQDLLPPRLAPILTWARERLAAEDGIAR

>Tbd_2636_UniProt_Q3SFL7
MSTDTAYQHPLMAAYWKALDTRFAQVEEVFDDCMAEALTVLSAEGVAAYLEAGRVIGKLGRGVEPMLAFLEEWPSTAQAVGEAALPMVMALIQRMQKSPNGKAIAPFLQTLAPVARRLQSAEQLQHYVDVTLDFMTRTTGSIHGHHTTFPSPGLPEFFAQAPNLLNQLTLAGLRNWVEYGIRNYGTHPERQQDYFSLQSADARAVLQRERHGTLLVDVERKLDLYLRGLWQDHDHLVPYSTAFDEIRKPVPYYDKLGMRLPDVYDDLVLPCPAGRGGAGGEDVLVSGLDRYRATLAHMVGHRRWSEAQIADNWSPFQRMAVEFFEDCRVETLLMREYPGLARIFRALHPKPVEAACDGETTSCLRHRLAMLSRAFIDPDHGYAAPVLNDFVARFHARLADGTSSTSEMADLALSYVAKTRRPSDQFAKVHFDDTVVDYRDDNRQLWKFIEEGDEEEAFDAKRKIEPGEEIQGLPPRHYPEWDYTSQTYRPDWVSVYEGLHRSGNAGDIDRLLAKHAALAKRLKKMLDLLKPQDKVRVRYQEEGSELDLDVAIRSLIDFKGGATPDPRINMSHRSDGRDIAVMLLLDLSESLNEKAAGAGQTILELSQEAVSLLAWSIEKLGDPFAIAGFHSNTRHDVRYFHIKGYSERWNDDVKARLAAMEAGYSTRMGAAMRHAAHYLSARPADKKLMLILTDGRPSDVDAADERLLVEDARQAVKELDRQGIFAYCISLDAQLKAGADDYVAEIFGRQYTVIDRVERLPERLPELFMALTK

>Tbd_2637_UniProt_Q3SFL6
MTTNKEQYKVHQEPYYQAQGREVQLYEAAYRNRLPVMVKGPTGCGKSRFVEYMAWKLNKPLITVACNEDMTASDLVGRYLLEANGTRWLDGPLTTAARIGAICYLDEVVEARQDTTVVIHPLTDHRRTLPLDKKGELIEAHPDFQLVISYNPGYQSLMKDLKQSTKQRFAAFDFDYPDAALETTILARETGLDETTAGRLVKIGGVARNLKGHGLDEGISTRLLVYAATLMKDGVDAGDACRMALVRPITDDADIRETLDHAIDATFA

>Tbd_2638_UniProt_Q60028
MDQSARYADLSLKEEDLIKGGRHILVAYKMKPKSGYGYLEAAAHFAAESSTGTNVEVSTTDDFTKGVDALVYYIDEASEDMRIAYPLELFDRNVTDGRFMLVSFLTLAIGNNQGMGDIEHAKMIDFYVPERCIQMFDGPATDISNLWRILGRPVVNGGYIAGTIIKPKLGLRPEPFAKAAYQFWLGGDFIKNDEPQGNQVFCPLKKVLPLVYDAMKRAQDDTGQAKLFSMNITADDHYEMCARADYALEVFGPDADKLAFLVDGYVGGPGMVTTARRQYPGQYLHYHRAGHGAVTSPSAKRGYTAFVLAKMSRLQGASGIHVGTMGYGKMEGEGDDKIIAYMIERDECQGPVYFQKWYGMKPTTPIISGGMNALRLPGFFENLGHGNVINTAGGGSYGHIDSPAAGAISLRQSYECWKQGADPIEFAKEHKEFARAFESFPKDADKLFPGWREKLGVHK

>Tbd_2639_UniProt_Q3SFL4
MRRLTLRQFRIFEAVARHLSFSRAAEELHLSQPAVSMQVRGIEVILGMPLTEQIGRKIFLTDAGREVLHASQAITARLDDLQHNLVQLRGLEQGRLTLAVTSTVNAVATGILARFRARYPDIAIHLGVSNRAEVLDMLVGNQVDLAIMGQVPDHLGLDATRFMDNPLVVIAPPDHPLASRRKVPIETLADEPFLVREAGSGTRGAMERFFAARGLELKSSMEMSSNEAIRQAVQAGLGLGILSLQTLELELALKRLAVLKAEGFPIMRHWYVVHRADKRLSPVAQAFKKFVLGGQGGRRRPA

>Tbd_2640_UniProt_Q3SFL3
MTTRPNPLLRFLPFLAWFPMTRESLRADLLAGITVSLILVPQSMAYAQLAGLPVVYGLYAGFLPVIVASLWGSLRQLHTGPTAMLSLMSAAALIPYAATGSETFIALSLMLALMVGILRLALGLFRLGVVVNFLSHPVIIGFTNAAALIIGLSQLNKLVNVPMPRSDWFLGDLWVVLQQLGSTHWPTLGFGLGAFALILVLQKRLPRLPGVLIAIVVTTLASYAIDFERTAKAGVDAIEDPGVRAQVMQLDQATAELQRHNETAARLQSELARAEDDGAPLDTLLDLKGDIARSQAAAYALGDRMMTLRIQLHRVDFTQQSGADGAPRFAVAGEMPKSEPLGTGHWRFGGIAGGEVTFTGGGEVVGAIPAGVPGFQVPHVDWALVLPLLPAALVMALLGFMEATSISKAISAKTGQRIDTNRELVGQGLANIVGSFFHAYVVSGSFSRSAVAAREGARTGLFAIVSALGVLAVMLFLTPLLYHLPQAVLAAVIMLAVFGLVRVAPLFHAWKVNRPDAVIGIATFVATVAMAPALANGILLGVGLTVALYLFRNMRPRAEILGRHPDGVLGGIDTHNLPAVSEHYVALRFDGSLNFVNVAYFEDVVLQALERFPHAKAVLVIGSGINDLDVSGEEKLRALVEQLRARNVNLYFSSLKRQVLAAFERSGLSSVIPGDHIFKTKEVALKTLDACYGSGRIGPAVPA

>Tbd_2641_UniProt_Q3SFL2
MPALRIALANQKGGTGKTTLAVNLAAGFHRRAATALVDADPQGSAGQWARLAGQPDDLPQVRTVGAAAVEAVIGEAARTHRYVLVDCPPHLQSGALDAVMHAVDVVLIPVQPSPLDLWASVDMADAVRDTQRRNTRLRAYLVVNQLDRRNALSGAMQQALAEFGLPALANGLTRRAAFRSAALEGGSVYALGHRGAAAAADVEAIIKEVLRS

>Tbd_2642_UniProt_Q3SFL1
MPDDNNPIPHWQRQDLPPMLSRRFEFETYSETRRFLDGVAELAEAAQHYPNLSFGKTYVSVTLDADGKKVGPDLVALAQQIDSLVAGTP

>Tbd_2643_UniProt_Q3SFL0
MDPRLLGYLNRALAHELAAVQQYMAQSRLCDLWKLADYCSHFHQDVIEELGHVASLTDALLKLGTAPNAMQLPPVRLGRSLEEMLAIDRVLEVEAVRLYEEAAAYSARVRDDVHHALFRKILNDELEHLQELDRMEADLVRKEKRYA

>Tbd_2644_UniProt_Q3SFK9
MDMVVEAQRSSVTGTATGIALGMIETRGLVPAIEAADAMTKAAEVRLIGRQFVGGGYVTVLVRGETGAVNAAVRAGADACERVGDGLVAAHIIARVHNEVEGILPTEADAGGGGRDGEVACVNS

>Tbd_2645_UniProt_Q3SFK8
MATGMTGIALGMIETRGLVPAIEAADAMTKAAEVRLIGRQFVGGGYVTVLVRGETGAVNAAVRAGADACERVGDGLVAAHIIARVHSEVENILPTAEAAAA

>Tbd_2646_UniProt_Q3SES1
MANAMTGIALGMIETRGLVPAIEAADAMTKAAEVRLIGRQFVGGGYVTVLVRGETGAVNAAVRAGADACERVGDGLVAAHIIARVHNEVENILPTAAAA

>Tbd_2647_UniProt_Q3SES0
MEIMRVMSDLVCTRRIPGLYSASLRVLADQKGVLAVAVDPVGVPEGKWVFTAGGSAARYGAGDYRILTDLTILGIIDQWDVVDGHHEATKAVSLTCKGETSWQTQ

>Tbd_2648_UniProt_Q3SER9
MKIMQVEKTLVSTNRVREMGHRPLLVVREKAGGTRSVAVDAVGCIPGDWVICVGSSAAREAAGAKDFPSDLTIIGIIDHWQEQH

>Tbd_2649_UniProt_Q3SFK7
MNTRQRLEAMGARRPAPVGMAMRTAPAAQSLPSWPQRASFCPPGMEARGGECVSSACAPQAHPLIDAVRNAELAEYERTVRERFDAIVPTLKEIAGLQHEAGFEQRAQQIAGERLGFTLPEAVLADAWITTLDMRALYGHSVLQTYHWLARDFTARWDGHAEAQAVERFFIECGFHEVDISSCADGRLKGLLQFVLRLPHQAVHRRKSYAGALFDVELNVKHWTETELRRFREGVPTTSDAGTRYLKIAVYHFSSSDPEHEGCAAHGSDDTRAAQAALDRLAAFRTAIENGFCCGASVATLLIGVDTDTDAIRVHVPDADGAMRTDCAVDNLAVYRQTAGMAASEARWRLDTAIDEAAREHGRSAPESGMRRLIERLLTNNLSQIDYVCAQHNGRYADIGHAERFINIGDGFDEVFLRNLAYFGHLHTIEEGAADMDVGVKIFSGLNVARGLPIPIAIHYRYDAQVPGSRERAVARCRRVKAAIETRYPHLAKEGLLYCGMTVQGKGPGSAHEAVTDCDGNSQGH

>Tbd_2650_UniProt_Q3SFK6
MSEATATATGERLSGREAALARRRALSIHGKSALQSGQAAKPRSATEARLAARATPPASTPAASAAPAASCGCQHGETFAARVEEARPAAAPVAPAPISAVRKRRIEQSQKGRGDAPPCRPCGRVKPEPPKVQTGTTLAGSTVTGNQVERTTRVTGNESGTCRTVTGTEYVGAEQFGEFCGTLPEPAPAKVGQTSTSRGRRVTGTEVGRSTRVTGDETGTCKRVTGTEYLAAEQAGEFCGTTPEPRPEKAVMGMTAARNAVSGSDLARNVNVTGGEAGAARSITGSAYADGSARSTTEGRGPKKVETRRTGAGATVSGTLPGRSSKLSGDEPGACARVTGSDYVNTEEFVSFCRTEPYQSPAKVGVSRTFAGQDVSGTQVGRAARVTGDEHGTCKPVTGTSYIGAEQYAEFCAARTAAEAINRARLSRNADLTGIQPGPDAKMTGNERGTCQPVSGTPYLGEGQAAAVCGGAPMARAYRSRGPEGTQAPASITGNAMDAGQGGNRTGDFSVMSPARAAASSEARRVTGSAYGVGGRVTGPLTRATGLVSGTPEFRYRDEAGPAPVPAAPVPAAPEPVAEAAPDRITGEGRERRITGDAWDRGGRVTGTEGPATRRNPTQRGDARGNGVGARAFRDVETPAPPASRITGSAGNASAGATITVSGGARG

>Tbd_2651_UniProt_Q3SFK5
MNVTFRQLRLLEAVARHSSFTRASEELHLTQPAVSTQIKQLEEEIGMPLFEQMGKKIFLTEAGKEVYAFSRNLAQQFRDIESVLDDMKGVKRGTLSLTVTSTGKYFAPYLLAAFLKRYPGTQVHLEVTNREEVVQQLHDNTPDMAIMGTPPEHIELHSQAFMQNPLVIIAPPDHPLVGVSRVPLSRLVEENFILRERGSGTRNAVERFFEQRGIKLNTSMEMSRNEAIKHAVMAGLGLGIVSLHTLEFELALSRIALLSVESFPIMKEWYLVHRNGKRMSPIAQAFHQFVLNEADRIMKLPQPKPVTRSRRRVTRS

>Tbd_2652_UniProt_Q3SFK4
MTSLNLSPLKKIEIILEGAHQEFATDLLDRAGVTGYTIVGNLSGKGRHGFHEGHLMFNEDAVLIMIIVAVPAELVEPILEGFSPFFGTHTGVMFISDIQVSRLVKFKS

>Tbd_2653_UniProt_Q3SFK3
MTLALGRRLKIRALVHVAGEPIPYFWPMRTFIHHNPLYGLEHLPFEQAVAMGERLFRAHGFLPRARQQAYLAAGRVDATVLAAQVARFCADQPEVAGLDLERLLLTLLTDVETPLGAPPTLADAADVHAVLRGAALPAREIPSGALAAQVGSDMPPGRPLYAMLDLLFGTEIGATLDELVIKSCLDFFDEGQSVWQMPGREQGLFRAWSAVARRNLRLFIRGLHIKRILAVDDTPEGIISHVMGELGVPEDDWMNHFTCELTRLHGWAGFIRWRSGAKHYHWTRRYPADLVDYLAIRLVLGLALLREHAARAGTPANLAELARRVESNPAEAYLCREFHGGRVLPEMAHAVEDAIAARRPARTARLLPRYLERKREIEARRHAQSLTRLAERAGMGAALQRLAPDDLARLTALLARFEDEEGRMWLAAREAHYMGRLLPCLDLAPPAPPEKRPFAQVMFCIDVRSERIRRHLEKLGSYQTFGIAGFFGVPVSFIGLEKGSETHLCPVVATPKNVVLELAITRNADDEAFVSTLEQVFHELKASVLSPFITVEAIGLLFGLDMFGKSLAPLAYSRWRERLHPDKPDTRLLLDKLSREQAESIIRSLQRALIVKAVRRELGIPRELLTDEMIRELRETALGNQAQAAGFAQRFELDCDAETGFVERLRQVYRIDRGYARLQLERLGRIGFTLDEQVHFVGQALRSIGLVSGFSRFVLLTGHGSTSENNPYESALDCGACGGNHGITNARVLAQIANKTAVRARLREQGIVIADDTWFVPAFHNTTTDELRLYDLDLLPPSHLVYTERLINGLQAASHLCAAERMRTLQDTPGDADENGDSAGAYRLARRNALDWSQVRPEWGLARNAAFVIGRRDATGGLDLEGRVFLHSYDYRCDPRGRLLENILAGPLVVGQWINMEHYFSAVDNAHYGSGSKVYHNIAGRFGVMTGNLSDLRTGLPAQTVLKDSAPYHEPLRLLTVIEAPFAHARAAVEGVVKVKNLMHNGWLRMAVVDPETRFAYVFEDGGWRQYPHDAVSEAVEEKETVL

>Tbd_2654_UniProt_Q3SFK2
MTTLAIIALFLPLFPASIVLNAALARLHDPLARGALLLVWPQLGVALLQRAPQELPSYLLPWALATSAFYALRLLTVRDMGRWAGFLATSALALAWVLAGGDATALHAFVLGFSLPTALMAVLARPLNRRFGAAYAGLQGGLLGGLPRLSGVLALSVLAAVATPPFPGFFALLQVLHGLDGAGAAGVLVIWLVWGWAATRLLQGFLFGPAQSASPADIGRVSTLVYAGALGGLAVAGLVLTGGWR

>Tbd_2655_UniProt_Q3SFK1
MDKLSILLPVLPLLSALTIALFAHRARRATARVSVGFAALTFLLAAVSLGAYLLEGEPRWYALERAWGSLYLDPLASLMTLMVAGISFVVHVYAVRYMAEEPGYARFYVLLDLMTAAILLMVAAGDLVTLLVAWHLIGVLLYFLLAHDTVRPAAQRYAFWSFFTYRLGDLPLILAAVLLYRAYGTTSLPELFDSITAAPGAHVVLGMPLETVVALLVALAAFARSAQFPLHTWLPYTMEGPTPVSALMHAGIVNAGGFILNRFAPVFVHAGEVLHLVFAVGLVTAILGSVLMLMQNDIKKSLGYSTMGQMGFMFVEAGVGAFSLAIYHLIAHGLFKGTLFLGAGSVIGNARKDDGVPHDDVYTFVVERKPVAYRLPWVAAAALTVVVPFAILGLSHWLVDDDFVGRQGAIILLFFGWVTGAQLLFVTYRLRAGSPWRMMAMIILSLVIVVAGYTWIGHAFDVFLYPDRGFSDRLYAAASIPLGTFEVLAAILTAAVVGGWLATYYATANGGARSGPASPLRLALYSLLSREFYVADVYAWLTQAVLALSRRLNVWFRWV

>Tbd_2656_UniProt_Q3SFK0
MRDTGRPRWSHAGEPRVAPPRPLRLESRRRGTGSRHPGSARKTCHVQAWFYPLSAGERLLDTARTLPFPPPAPVKLGSALRYWLKLGFVSFGGPAGQIAMMHHELVEKRRWISEHRYLHALNYCMLLPGPEATQLAIYVSWLLHGTLGGVLAGVLFVLPGFLLLALLAALYLAWGEVTLVQGLFYGIRPAVVAVVLFAAWRIGSRALKNEVLWGMAALAFIGIFVFDIGFPWIVLAAALLGALGGKFAPHKFRTGGGHGAGHKAYGAALIDDDTPPPAHARFAWRRLLATSGVFVLIWLGAMLALRGLPELQHMGDFFTGAAFLTIGGAYAVLPYVYEGAVEQFGWLSGVQMMDGLALGETTPGPLIMVVTWVGYLGGVSKEILADPVAAGFAGAAVATFFTFLPSFFFILAGAPLVEATRGELRFTAPLTGITAAVVGVIVNLAVFFAWHSFWPQGSADAPFRGDFEWFSVIVAVVAFVALWKYRADIVKVIGACALVGLAYSSYM

>Tbd_2657_UniProt_Q3SFJ9
MEPKIIQPPKRCGCANPSEKCEELARTIRPGKVDPDAVLVFDVRREADYAASNETIPGALWKNPDKIDAWIGAVPRTLDVVIYCVRGGAVSNAVVDRLHAAGVKARYIEGGLEAYKAAGGKVARK

>Tbd_2658_UniProt_Q3SFJ8
MEREINGKMVETDPEGYLVNLEDWSEELAIELAKEDKLELGENHWKVIHYMRDQFAQNGTAPNLRFLQKGLKEEFGNEWGDKKFLFDLFPFGPAKQAGRYAGTPKPTGCV

msu.edu Reference: BMC Caller: a webtool to identify and analyze bacterial microcompartment types in sequence data
Sutter M & Kerfeld CA; Biology Direct 17, 9 (2022)
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