Home BMC loci Shell proteins Help Locus database News Citations Contact

BMC type: BUF1


Organism: Alkaliphilus peptidifermentans DSM 18978. Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae;


   BMC-P    BMC-H/Hp    BMC-Ts/sp    BMC-Tdp    AldDh    PTAC    signature enzyme    AlcDh    regulator    others    no assignment

             SAMN03080606_03804 (fasta)
                     SAMN03080606_03805 (fasta)
                                  SAMN03080606_03806 (fasta)
                                             SAMN03080606_03807 (fasta) HMM13382deam_1_buf1 BUF1 (HMM details)
                                                 SAMN03080606_03808 (fasta) HMM00857isoch_1_buf1 BUF1 (HMM details)
                                                     SAMN03080606_03809 (fasta) HMM02441_02 BUF1 (HMM details)
                                                               SAMN03080606_03810 (fasta) HMM01977ubiD_1_buf1 BUF1 (HMM details)
                                                                 SAMN03080606_03811 (fasta) H_treeGreen BUF1 (HMM details)
                                                                    SAMN03080606_03812 (fasta)
                                                                      SAMN03080606_03813 (fasta) H_banana BUF1 (HMM details)
                                                                        SAMN03080606_03814 (fasta) H_fuchsia BUF1 (HMM details)
                                                                              SAMN03080606_03815 (fasta) HMM02441_04 BUF1 (HMM details)
                                                                                SAMN03080606_03816 (fasta) P_moss BUF1 (HMM details)
                                                                                              SAMN03080606_03817 (fasta) HMM13382deam_1_buf1 BUF1 (HMM details)
                                                                                               SAMN03080606_03818 (fasta)
                                                                                                         SAMN03080606_03819 (fasta) HMM00860tp_1_bufgrm BUF1 (HMM details)
                                                                                                                   SAMN03080606_03820 (fasta) HMM13382deam_1_buf1 BUF1 (HMM details)
                                                                                                                         SAMN03080606_03821 (fasta)
                                                                                                                            SAMN03080606_03822 (fasta)
                                                                                                                                     SAMN03080606_03823 (fasta)
                                                                                                                                            SAMN03080606_03824 (fasta)
                                                                                                                                                       SAMN03080606_03825 (fasta) HMM13382deam_1_buf1 BUF1B (HMM details)
                                                                                                                                                                   SAMN03080606_03826 (fasta)

BMC shell protein types:

BMC-H(map on tree)

       H_fuchsia
       H_treeGreen
       H_banana

BMC-P(map on tree)

       P_moss

(complete list of loci)

Protein sequences:

>SAMN03080606_03804_UniProt_A0A1G5KVI2
MEIQGKKVPVTIFILFIIFAIIQTVFANYVSGIILIVVNMILLPAIATFILFKTYYRPLKKILECINRINENDLMFEVYSNEPGWCGVILKQIEEMVSNQKKNFRQEVNTSTEIAEVSRQLNEVSAESTETMTSIAVSTEITCRKGEEQFEMLNDIAKENNEMIKTLDYVSLEMDNTTKFTGDTIREAQRGIDATGAIKEKMKEIKDVVEATAKQVEKLKNDSYKMEGMMDLINSITEQTNLLALNASIEAARAGEHGKSFAVVAQEVSKLSQGTREVSKEIEEVLFNLKIEIEGIGDWMKQEKLQVDESYKLIEHTVEDFYKVNSALQLSIDKIENMNQNIGKVNAKGKNIGSNIQEATMFSKEISAQMQQSTAEVLLQNQRLVNLQEITNTLYENADQMQQNVTSMVMEGKMLQAVDYIQNDTKNKAIDKQQVARLLDETGMDAIYITDKMGVVKHCNEESSIGLDLYKVDPSFIALRERKVTKVTTPVKKRVEDNKLFKFLATIDENGIIYQVGLSIDTLLKF

>SAMN03080606_03805_UniProt_A0A1G5KWV4
MTEKQYVLAVPNFSDGRRKEVIEAIVEPLRNVEGVSLVSYEPEHDFNRTVVTVIGEPTPLKEALLNMAQKSYELINMEEQQGTHPRIGAQDTIPLFPFKNITIEECVKLAEEIGEEVYKRFEVPVFFSGQNSRNEDRKALSFIRKGQYEGLKEVAHTDERKPDVGPAALHPTAGATIVSADLEGLTAYNVFLATEDLSIAKNIAKGVRGPSGGFSTVRAVGIKFPEREGVVVSMNMFDCGATPLYRAFNFVKQEAARYGVAVTGSEIVGPVKLDYLLNSLEYYLGLENFRKEQILETHLMK

>SAMN03080606_03806_UniProt_A0A1G5KX20
MKTDVQIAQEAKMKPITDIAHDLGIQEDELELYGKYKAKVSLDVFKRLENKPDGKLVLVTAINPTPAGEGKTTTNIGLSMGLNKIGKKTITALREPSLGPCFGVKGGAAGGGYAQVVPMEDINLHFTGDIHAITTAHNLMAALLDNHIHQGNSLNIDTRRIVWRRVLDMNDRALRNTVVGLGNRGDGVPRQDGFDITVASEIMAILCLATSMEDLKARIGDMIVAYNMDNEPVTAKDLEATGALTLLLKDAIKPNLVQTLENTAAFIHGGPFANIAHGCNSVMATKLALKLADYVVTEAGFGADLGAEKFFDIKCRFAELKPDCAVIVATARALKNHGGVPKANLNTENLEALEIGFGNLEKHIENVQKFGVPVVVAINKFPTDSEAELKLIFDKCQALGAEVVLSDVWANGGDGGAEMAKKVVDTIEKKPSNFKPLYDVELSIVEKIEKIATEVYGADGVEFTKSCENQIKNIEKLGLDKMPICMAKTQYSLSDDPTLLARPKGFKVVVREIRISAGAKFLVALTGDIMTMPGLPKVPAANHMDITEDGEIVGLF

>SAMN03080606_03807_UniProt_A0A1G5KXH0
MKYDVVVKNAKIPQGDETVMTHILVKDEKIAGFVTNLDGIEYNSEIDAEGNLTLPGCFDSHTHFMDPGFTHRETFLTGSSSAAAGGLTTIMDMPCCSKPSVRGVEELESKLNAIKDQAVIDYAMWGGVTGEDIRAGKKHIIKEQADYGVCAFKVYMTPSVPTYERVNDPEMLEAFRWVAETGVPVGIHAENFAMCDYFVKKFQKEGRTDGPAWAEARLVEAEQSAIELGINFAKSSGARLHIVHMSSGIGAKLVGEAKKKGLDVTSETCPHYLMLNYQDAMTEHKQFAKIAPPLRTKKDNEELWEGLQNGSVDFMATDHAPYEIETEKDAPGMDIWTAFPGIPGVETLVPILVSEGYNKGRLTLGRLVEVLSSSPAKMYGLYPKKGALMIGSDADFTIIDLEREWTIDQKKTESMAKYNPLHGIKLKGKPVKTVVRGTVVYDDKEGVIGKPGFGQFVKRQRIQKLERTIKY

>SAMN03080606_03808_UniProt_A0A1G5KWY0
MPRHAILVIDMLNDFVGVKAPLRCPGGETIIPDLQKLFKWVRSRKDDDIHLIHIQEAHRKNDADFRVRPVHAVKGTWGSDFIPELYPEGDEYIVPKRRHSAFAHTDLDLYLREENIDTVVVTGVWTNVCVRSSATDALANAYKVITLSDGCASKTEEMHLNGLKDLSIFTKIMTIDDYINAWEKGEDPWIGGGDAKNEVE

>SAMN03080606_03809_UniProt_A0A1G5KWY9
MGVTGGSCAIYGVGLLKVLQQLNIETHLVVSKMGEYVVNHECGMDLAELKSLATVYHDNNDLAAPIASGSFKTDGMIIIPCSMRTLAAVAHGMSDNLLTRAADVVVKEGRKLVIVPRETPLSVIHLENMLKLARIGVKILPAAPGFYHQPESIEEIVSIMVGRALDQLDVEHNLFKRWGEK

>SAMN03080606_03810_UniProt_A0A1G5KXJ9
METQMLRAAMDQLRRKGYLQECNKEVDPKFELGAVLKYYKNEVPILFNKVKGSKVPVVGALFGERDIYYEMLGITHEERIFRIIDAIANPKPTKLLSKGPIMENIITRNIDLQRMFPIPTFHEEDSSSYITAGLVVLKDPETGKSHVSVRRLQINKGNEISILVASPLATKQFSEMEKQNKPLEVAIVLGYDYSLLLASQISSETYGVDKYEVDSALRGEPIELVKCHSIDVEVPAFSEIVLEGIMPPNKREIEGPFGELMGYYGAVGPHPIVEVKTVMHRNNPIFQTAFPCREEHLSNGLIREVELYTSVKSLVDVKDVNVTVAGGCRFHAFVSINKRSDGDGKSAILGALASSKDVKHVVIVDNDVDIYDPSDIEWAIATRMQASQDLVIIPGALGSGLEPSHTLRGVTDKVGIDATRPLGDAARRFERAIIPGYEDIDIKKYLPGFKLK

>SAMN03080606_03811_UniProt_A0A1G5KVN5
MKQALGFIETRSLVAAIQAADTMVKSADVTIADFNYVGSGIVAVVVAGEVAAVQAAVANGIETASEIAEIISSNVIARPHDEVDKLLVPHHN

>SAMN03080606_03812_UniProt_A0A1G5KVR6
MANPLTRVIMNNIAGKTLSSNNNTSNTKKVTNLKEQEEKLLVDLIYKERKIEGFRDKGPSVKSVQQVKYTSLSELAAKSGKIDEERDDKEANIKSNPPENKEAYVKKHVNTGTYIDLKSLQSLGNKGSSR

>SAMN03080606_03813_UniProt_A0A1G5KVQ0
MRAALGLIEAVGLTTAVTALDAASKAADVKLVGYEKVIGAGKAISVTVQIAGDVAAVKAAVEAAETAARKVGIILSSHVIPRPHEEIDLLIKAFEKNLKNKKTADTPAENKSQSKVKKSDKNKENKE

>SAMN03080606_03814_UniProt_A0A1G5KVT4
MSQALGMVETKGLVGAVEAADAMVKAANVTLVGYEKIGFGLVTVMVRGDVGAVKAATDAGAEAARAVGELHSVHVIPRPHTEVERVLLKGE

>SAMN03080606_03815_UniProt_A0A1G5KVS2
MNRYNHTQRIIEHLITKNINSLQPKGNNHLMVALTGTNIGLDEAMRELTVIRKQGFTMDIVVSNSGEEILDIKEICRQLSPKEVYTENLSLMKEGFMEEIDGVIVPLATQNTAFKLVLGIQDQLIPRLLWQALWQGKPVWMNLEDLTQYKGFPTKQPFMLEKVKENIKQLEKMGIKHLKRPFNIQELLLEIENCTNYNINLVSTTNTLTNKETFTAEYSRQVITEKDILTANTSLGEMIVPKGAIVTPLAKDTAKALGIQINKK

>SAMN03080606_03816_UniProt_A0A1G5KWJ2
MNIGRVIGTVVATRKDERLIGCKLMLTQPINVDEEPVGEPLVAVDTVGAGIGEIIIYTKGTAARHAAEKLQSPIDAAIVGIVDNIDLYRDLIKKN

>SAMN03080606_03817_UniProt_A0A1G5KVW3
MLDAMKVKRAMEYRELIDVLMSDKHFADVVLYQGNVINVLTREIYQADLAIKGNYILMVGDAEKLIGPDTIVVDVKGKYLSPGFIDSHMHFESSMLTITEFSRLSIPSGTTTLVADPHEIGNALGPIGMKAMAEEASVVPNHVHLVVPALTPDCPGLETAGYDVTSKDMAEILNYPNVIGIGELQGFSNAKHVYRNTPEVITDLLASTIYARSIGKIVDGNAPELFGNELAAHIISTAGECSCHETTTKEECVEKLRQGVYVFMREGSTQRNMAECIRAVTEEGLDSRRCILATDDMVAEDLEKLGHMNEIVKRTIDEGVNPVEAIQMVTINPATYFGLKDRGILAPGNLADIAVISDLNEMKVEAVFLEGKLVASQGQLLIDLPKYTYPDNVKNSVKCKPITEEDLKISVNGSEATVRCIGLIPDQNLSESLELRVKAQQGVAQPDVKQDALQIVCVERYGRNGSIGKAFVQGFGLQQGAFAESVAHDTHNIMAVGTNLKDMVAAINHVIEIGGGIAVAKSGRIIEDLRLPVGGLITDELTGPEVSRKIVALENTVKDQLGCKVHAPFMHLSFLALSTSPKWKITDQGLIDVNNFEILPPVVE

>SAMN03080606_03818_UniProt_A0A1G5KVU9
MEVDKGGGNGNKVQLGRHNVVNHRKQKRGFYSEFESTNGK

>SAMN03080606_03819_UniProt_A0A1G5KVY2
MSSKVQTENSFLEKTFKLKEHNTNVKTEVLAGITTFMTMAYILVVNPDILSATGMDFNALFTATALSAAIATIAMAFLANYPFALAPGMGLNAFFAFTVVLGMGYSWEFALTAILIEGIIFLLLTFFNVREALVNSIPINIKHAVSVGIGLFIALIGFKNAKIVVAYDATLVALGDLGSPGVLLALAGLIITGILLAKKVKGALLIGIVATTAIGIPLGITPIPSQIISAPPSLAPIFFKFDFSNIFSLDMIIVVFTFLFVDLFDTLGTLVGVASKADMLDKDGKLPKAKQALFADAIGTTIGACLGTSTVTTYVESASGVAEGGRTGLTALTSGALFALSLFLAPLFLIVPSEATAPVLILVGLFMMSPINKIDLNDFTEAIPAFLTIVMMPFTFSIAEGIVFGIMSYVFLKLCTGKGRDVSMIMYALAVIFILKHVVEKFL

>SAMN03080606_03820_UniProt_A0A1G5KWM7
MKKLIKNAIIVTMNEKREIIKGDILIEGDKIEKIAPTIVVEDAEVINADGKVVIPGLIQTHIHLTQTLYRGQADDLELLDWLKERVWPLEGSHTSESNYVSAKLGISELIKGGTTSIIDMGTVNHTDSIFEAIDESGLRAHAGKCMMDYGVGVPATLMEDTEESIKESIRLLKKWHGKSNNRINYAFAPRFVVSCTEELLVKVRDLSREYGVMVHTHASENRGEIELVQKDRGMRNVVYLHKLGLTGEKLILAHCIWLDEEEMKLLAETGTRISHCPNSNLKLASGIAKIPELLEMGAVVSIAADGAPCNNNMDVFQEMKSAALIQKARLLSPTVMPAQQVFELATIGGAKAMGLADKIGSIEEGKKADVVIVNLDKLHCYPSDEVDVVSRLVYAAQASDVDTTIIDGNIVMQNRQLLTLNEKEIMKDANRLISQQIKRANVKK

>SAMN03080606_03821_UniProt_A0A1G5KVX7
MEIKEVFKPKAIEEAIKLLDHYQEASKIIAGGTDLIISIREGKEPAPVIIDVSSIGEIKEINEIDEWIEIGAGTTFTNITEAAILQGRYQGLIDAAASVGSPQIRNAATIGGNICNASPAADFIPPLLALDSLLIIQSTDQIREVKLEDFLRDKGKVALSSNEILTKVKFKKLNKGQGLGFNKLGLRKALAISRICTAVYLEVSEDSKCNEMRIANGSLGRYGLREKAVEDYFKGRALTDDTIRIGGGLLKDEVNSRLQGRSSAEFKREAVDGVFTVALTKAIENCSHRKGDLI

>SAMN03080606_03822_UniProt_A0A1G5KVY7
MKKISLKINGKEYNVEIEKDMRLLDLLRDQLHLTGTKEGCGEGECGACTVIMDGVTVNSCMVLAFQADGSEIITIEGLDKGDKLHPIQKAFLDEGAVQCGFCIPGMVLSAKALLDKKPSPSRKEIREGISGNLCRCTGYNKIVDAIDKASQYLKEEGEEK

>SAMN03080606_03823_UniProt_A0A1G5KVZ6
MKLEVVGQSVIRVDGLAKLRGKATYPQDLYMDNMLYGKTLRSIKPHANIRLNISKAEKMEGVIKILTYKDVPHNHYGVLFKDHEVFSSTKVRSIGDPLAFVVATSDKIATKALEEIEVFYEDLDAVFDPIEAMQDNAPKVHDKSNIVYKYQLRKGDVDKAFQQCDVIIEEEYKTSMVDHAFLQPEAGLAYQENETFVVCAATQYPHFDQLEIAEALEVPLEKVRVINPAVGGAFGGREDITMQIHLALATKLTGRPVKTIYSRQESFVAHSKRHPLIMKYKTGANKEGKLLAMEATIVGDTGAYASWAINILRKSGVHATGPYEIPNVKVDSYAVYTNNPFAGAMRGFGATQVPIAHEQQMDMLAEKLNINPIEFRLINCFRKGSTTATGQILEESIPLVECIEAVEKSLKQTTQGGV

>SAMN03080606_03824_UniProt_A0A1G5KW26
MKKRGIGYASTFYGTGYGNGFPDISRAIAELGKDGNVYIYVGATEVGQGAKTILSQIAAEALGIDFSKITFICEDTSITPDAGTAAASRQTYNTGNAIKLAAEELKREIMNVASEELNVNTTNIQEYLKKIADIKGDKVIRKDGIFTASTTEMDVETGQGNPYYPYTFSVYGVEVEVDTSTGIVEVLRAACGQDVGRAINPKLIEGQIDGGFSMGLGYAIMEDLNVENGKIKHDRFTSYLIPTALDMPDIDKIIVEDPESTGPYGAKGIGEPVLIAVAPAILNAIYNAVGVRMTEVPVTPEKLLKALREKERGA

>SAMN03080606_03825_UniProt_A0A1G5KXZ6
MVTPGQFARAIVPRGTTTIIADPHEIANVCGIKGIEFILQASEGLPLNIYIMLPSCVPATSFENSGAVLDAKELAKLINNKRVLGLGELMDYPGVISSDDSILDKIITAGEKKIDGHGPNIEDKELNAYVAAGVRTEHECSTLEEMKNRLELGLYILIREGSAARNLEALVHGVTRENSRRCLFCTDDKHPDDILSGGHIDNNLRLAVKQGVDPITAIQMATINAAECYGLKNVGAIAPGYSADIIVLDDLRDFQVNKVFKEGKLVAENKKAIFKVTSSDYSSVIDTVRMKEINKEDLQVEVKSDIVNVIKLLPHSLVTEKAVRKVETENGAFKYHKSLDILKMAVIERHKATGNIGLGLVEDFKLKGGAIASTIAHDSHNLIVIGDNDDDMLLAINEVERVGGGITICSNGEVLRTLPLPIGGLISDGTMEEVNLQLNEMLNIAYNQLGVNKDIDPFMTLSFLALPVIPEIKLTDVGLFDVNKFCFMDLSVTE

>SAMN03080606_03826_UniProt_A0A1G5KY03
MIKRVTLSIFLVIVLLITACGGKEVVGPDNDVEMGDLVPSITILSSLPEANMVNYEMAQELVEELQKLGVDIKAEPTDFAVLLDRLYGEEGDYDAYTIGWSGRVERLDPDMFIHSINHSDNADPGGNNTNRYRNSAFDALADAQRQEMDINKRREYVFQAQQILAEDVPNITLYSRANVQVYDKERFDNVVNIPGEGLFNEWTPMWINPLTEDKILRVASNINLDTLNPLAAKSVYEWRNLRLIYDKLVRLSPEIEPIPWAATGWDVVNDTTIDIHLRDDMKFHDGVQVTAEDVKYTYELFIDRKVEYFASFLAPIDSIEITDENTVRFGLKYPYAPFITNTLTQIPILPKHIWENIDDPNEYANEKPIGSGPFIFENFRRGEELVVKTNKEYFEEIKIDGYIFNIFASPEGVLTALELHNIDMVSYDLVPAHIDLIKNNDGGKYNHLEMTEAQDIGFFYIGFNLDREPFNNKDFRIALSYLVDYDLALDVHLNGYGSRGGGGLVINAANEYWYNPAVPIYDTYDPERAKEILEEAGFTWDSNGKLRMPKE

msu.edu Reference: BMC Caller: a webtool to identify and analyze bacterial microcompartment types in sequence data
Sutter M & Kerfeld CA; Biology Direct 17, 9 (2022)
© www.kerfeldlab.org, 2022